Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0809 | ATGGGAAGAGGAAGAGTGGAGCTGAAGAAGATAGAGAACAAAATAAATCGACAAGTTACGTTCACAAAACGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGAAAGCTCTATGAATTCTCAAGCTCCTCCAGGCATGTCTCAATTCAATTCTCTCTTTCTCTTTCTCGTATAGCCAAGACGTTGGAGAGGTATCAAAGGCATAGCTATGGAGCATTGGAAGCCTCCCACCATCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCCCTACAGCATTCACAAAGGCGAATTCTCGGAGAAGAATTGGATAATTTGGGGACAAAGGAACTCGACCAACTTGAAATTCAATTGGAAATGTCTCTAAAACAAATCCGATCCACCAAGAACCAAACTATGTTTGATCAGTTATCTGATCTCCAAAAAAAGTTAGAAGAAAGTAGTAGAGCTGTTCATTCATCATGGGAAACTTCAGAGCCTAACAATTTGCAATACTGCCGACAAGCTCAAGCCTTTCTTCAACGCAATAACATTGCATTGGAAAATAGTTACAATCCTGCAGAAATTTCAAATCAAGAAAATGTTATGAGCTCTGAGCCAGAAGGTAATGGCTTGCCTTCACATTGGATGATGCTTTGA | 714 | 40.62 | MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSRHVSIQFSLSLSRIAKTLERYQRHSYGALEASHHPKDTERWYQEYLKLKAEVEALQHSQRRILGEELDNLGTKELDQLEIQLEMSLKQIRSTKNQTMFDQLSDLQKKLEESSRAVHSSWETSEPNNLQYCRQAQAFLQRNNIALENSYNPAEISNQENVMSSEPEGNGLPSHWMML | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 6972126 | 6977092 | + | Lag0004778.1 | Lac6g0809 | 610578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0809 | 237 | ProSiteProfiles | K-box domain profile. | 99 | 186 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac6g0809 | 237 | Pfam | K-box region | 97 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac6g0809 | 237 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac6g0809 | 237 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac6g0809 | 237 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac6g0809 | 237 | Gene3D | - | 13 | 104 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac6g0809 | 237 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac6g0809 | 237 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 191 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac6g0809 | 237 | CDD | MADS_MEF2_like | 2 | 90 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Lac6g0809 | 237 | FunFam | Agamous-like MADS-box protein AGL13 | 13 | 91 | - | - | |
Lac6g0809 | 237 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac6g0809 | 237 | MobiDBLite | consensus disorder prediction | 218 | 237 | - | - | |
Lac6g0809 | 237 | Coils | Coil | 136 | 175 | - | - | |
Lac6g0809 | 237 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac6g0809 | 237 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac6g0809 | 237 | SUPERFAMILY | SRF-like | 2 | 82 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g1844 | Lac-Chr4:37649297 | Lac6g0809 | Lac-Chr6:6972126 | 6.20E-49 | dispersed | |
Lac6g0809 | Lac-Chr6:6972126 | Lac7g0288 | Lac-Chr7:2240055 | 3.10E-29 | dispersed | |
Lac6g0809 | Lac-Chr6:6972126 | Lac6g0810 | Lac-Chr6:6986829 | 2.00E-39 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24017 | PF01486 | K-box | 1.20E-23 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g0809 | K09264 | - | csv:101220998 | 362.459 |