Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0809 ATGGGAAGAGGAAGAGTGGAGCTGAAGAAGATAGAGAACAAAATAAATCGACAAGTTACGTTCACAAAACGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGAAAGCTCTATGAATTCTCAAGCTCCTCCAGGCATGTCTCAATTCAATTCTCTCTTTCTCTTTCTCGTATAGCCAAGACGTTGGAGAGGTATCAAAGGCATAGCTATGGAGCATTGGAAGCCTCCCACCATCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCCCTACAGCATTCACAAAGGCGAATTCTCGGAGAAGAATTGGATAATTTGGGGACAAAGGAACTCGACCAACTTGAAATTCAATTGGAAATGTCTCTAAAACAAATCCGATCCACCAAGAACCAAACTATGTTTGATCAGTTATCTGATCTCCAAAAAAAGTTAGAAGAAAGTAGTAGAGCTGTTCATTCATCATGGGAAACTTCAGAGCCTAACAATTTGCAATACTGCCGACAAGCTCAAGCCTTTCTTCAACGCAATAACATTGCATTGGAAAATAGTTACAATCCTGCAGAAATTTCAAATCAAGAAAATGTTATGAGCTCTGAGCCAGAAGGTAATGGCTTGCCTTCACATTGGATGATGCTTTGA 714 40.62 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSRHVSIQFSLSLSRIAKTLERYQRHSYGALEASHHPKDTERWYQEYLKLKAEVEALQHSQRRILGEELDNLGTKELDQLEIQLEMSLKQIRSTKNQTMFDQLSDLQKKLEESSRAVHSSWETSEPNNLQYCRQAQAFLQRNNIALENSYNPAEISNQENVMSSEPEGNGLPSHWMML 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6972126 6977092 + Lag0004778.1 Lac6g0809 610578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0809 237 ProSiteProfiles K-box domain profile. 99 186 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac6g0809 237 Pfam K-box region 97 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac6g0809 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0809 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0809 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0809 237 Gene3D - 13 104 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0809 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0809 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g0809 237 CDD MADS_MEF2_like 2 90 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac6g0809 237 FunFam Agamous-like MADS-box protein AGL13 13 91 - -
Lac6g0809 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0809 237 MobiDBLite consensus disorder prediction 218 237 - -
Lac6g0809 237 Coils Coil 136 175 - -
Lac6g0809 237 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0809 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0809 237 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1844 Lac-Chr4:37649297 Lac6g0809 Lac-Chr6:6972126 6.20E-49 dispersed
Lac6g0809 Lac-Chr6:6972126 Lac7g0288 Lac-Chr7:2240055 3.10E-29 dispersed
Lac6g0809 Lac-Chr6:6972126 Lac6g0810 Lac-Chr6:6986829 2.00E-39 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24017 PF01486 K-box 1.20E-23 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0809 K09264 - csv:101220998 362.459