Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0810 ATGGGAAGAGGTAGGGTTCAGTTGAAAAGGATTGAAAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCTTCTGATTCCAGCATGGAGAAAATTCTTGAACGATACGAGAGATATTCTTACGTGGGCAGGCAACAACTTGCAGCTACTGAATCTGAATTTTCTCAAGAAAATTGGACTCTCGAATATTATAGACTCAAAACCAAAGTCGAACTTTTACAAAGAAACAACAGTCATTATATGGGAGAAGATTTGGATTCATTGAGTGTCAAGGAACTGCAAAACTTGGAACAACAGATTGACACTGCACTTAAACATGTTCGTTCGAGAAAAAACCAACTCATGTATGATTCCATCTCTGCACTTCAGAGAAAGGAAAGAGCAATACAAGAGCAAAACGCCCTACTCGCTAAGCAGATCAAGGAGAAGGAAAAGAGTGTAGCAATGGCTCAGCAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTGTCTTTCTTATTCCCACCAGCTCCTCATCCCTCTCTAAACATTGGCTATGATTATGTTACATATACTTCGCGTTTGTACCATACAGGCTTGCAAGTTTCGAGGGTCACCAATGAATCCCGTAGCACGTCTCGGGAGTTTCCGATGAGTAGAGCATCGGAGAAGCGAGCGGGGAAGGAGGAAGAAGATGATGGTGTAGCTAGCTTAAATAATGGAAATGAAAAGGGAATTAGTTATAACCTTTTATGTGTATTGCATGGCTAA 861 41.35 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQLAATESEFSQENWTLEYYRLKTKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPPAPHPSLNIGYDYVTYTSRLYHTGLQVSRVTNESRSTSREFPMSRASEKRAGKEEEDDGVASLNNGNEKGISYNLLCVLHG 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6986829 6992847 + Lag0004779.1 Lac6g0810 610579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0810 286 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac6g0810 286 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Lac6g0810 286 Coils Coil 127 147 - -
Lac6g0810 286 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g0810 286 Pfam K-box region 86 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac6g0810 286 MobiDBLite consensus disorder prediction 247 267 - -
Lac6g0810 286 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac6g0810 286 MobiDBLite consensus disorder prediction 233 270 - -
Lac6g0810 286 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac6g0810 286 Coils Coil 153 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0183 Lac-Chr10:1412884 Lac6g0810 Lac-Chr6:6986829 2.80E-73 dispersed
Lac1g3653 Lac-Chr1:55652290 Lac6g0810 Lac-Chr6:6986829 8.90E-29 dispersed
Lac2g0801 Lac-Chr2:6274321 Lac6g0810 Lac-Chr6:6986829 1.30E-32 dispersed
Lac2g0963 Lac-Chr2:7619653 Lac6g0810 Lac-Chr6:6986829 2.00E-24 dispersed
Lac4g0374 Lac-Chr4:8933038 Lac6g0810 Lac-Chr6:6986829 5.00E-59 dispersed
Lac4g1842 Lac-Chr4:37573476 Lac6g0810 Lac-Chr6:6986829 3.90E-21 dispersed
Lac5g2878 Lac-Chr5:47035658 Lac6g0810 Lac-Chr6:6986829 8.80E-37 dispersed
Lac6g0810 Lac-Chr6:6986829 Lac7g0288 Lac-Chr7:2240055 5.50E-28 dispersed
Lac6g0809 Lac-Chr6:6972126 Lac6g0810 Lac-Chr6:6986829 2.00E-39 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24018 PF01486 K-box 9.40E-29 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0810 K09264 - csv:101219414 378.252