Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0820 | ATGAGAACAGGGAAAAGCAATCAGGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTAATAGTAGCATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAGTGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGTGATCAAAAGAGAGATACTGCATCATTCTTGTTGGAGGTGATTGAGTATGTTCAGTATTTACAGGAAAAGGTGCAGAAGTACGAGGGTTCGTATCAGAATTGGAGTGGAGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACAGTCTGTCAAAAATGGTTCTGCTTCAGGACCAACGTATTCAGGGAAGTTTGATGACAACAACATTTCAATTTCACCAGCCATGCTTGCAAGCTCACAAAACCCTCTTGAGTCCCACGCAGGCAGAGATATGCTACAAGATGCTGACATAACGAATAAAGTTGCACTTCCCTTGTCATTGGAAGGAAATATACATGCTTCTATCCGAAGTGACAGTGTTCTTGATCAATCTCTCCACATTCCCATTTCTGATGCACAGACAACGGAGTGTCCCATCACCAACAATGCATCAAGCCAACCAGAGGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGTCTTTATTCAGAAGGGTTATTAAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAACAAGGGAATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCGGCCACCCAGCAATGGCACATGTAGGGGACCTGGGCAGTGGAGACGACTCAGATCAAGCTAAAAAGCGGCTTAGGACATGA | 999 | 45.25 | MRTGKSNQEDEEYEEDELVAKREGPSSTSNANSSIGNSKDAKNNDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNNISISPAMLASSQNPLESHAGRDMLQDADITNKVALPLSLEGNIHASIRSDSVLDQSLHIPISDAQTTECPITNNASSQPEEMAIEGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPPSGHPAMAHVGDLGSGDDSDQAKKRLRT | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7064318 | 7069197 | - | Lag0004789.1 | Lac6g0820 | 610589 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0820 | 332 | MobiDBLite | consensus disorder prediction | 44 | 62 | - | - | |
Lac6g0820 | 332 | Gene3D | - | 47 | 119 | IPR036638 | GO:0046983(InterPro) | |
Lac6g0820 | 332 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 47 | 119 | IPR036638 | GO:0046983(InterPro) | |
Lac6g0820 | 332 | FunFam | BHLH domain class transcription factor | 47 | 119 | - | - | |
Lac6g0820 | 332 | SMART | finulus | 55 | 105 | IPR011598 | GO:0046983(InterPro) | |
Lac6g0820 | 332 | MobiDBLite | consensus disorder prediction | 23 | 43 | - | - | |
Lac6g0820 | 332 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 5 | 332 | IPR044295 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro) | |
Lac6g0820 | 332 | Pfam | Helix-loop-helix DNA-binding domain | 51 | 100 | IPR011598 | GO:0046983(InterPro) | |
Lac6g0820 | 332 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 49 | 99 | IPR011598 | GO:0046983(InterPro) | |
Lac6g0820 | 332 | CDD | bHLH_AtBIM_like | 48 | 124 | - | - | |
Lac6g0820 | 332 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Lac6g0820 | 332 | MobiDBLite | consensus disorder prediction | 300 | 332 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g0411 | Lac-Chr4:9499759 | Lac6g0820 | Lac-Chr6:7064318 | 5.60E-53 | dispersed | |
Lac6g0820 | Lac-Chr6:7064318 | Lac3g0532 | Lac-Chr3:4060332 | 3.50E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24019 | PF00010 | HLH | 1.80E-13 | No_clan | Lac | TF |
Pathway information
