Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0820 ATGAGAACAGGGAAAAGCAATCAGGAAGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTAATAGTAGCATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAGTGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGTGATCAAAAGAGAGATACTGCATCATTCTTGTTGGAGGTGATTGAGTATGTTCAGTATTTACAGGAAAAGGTGCAGAAGTACGAGGGTTCGTATCAGAATTGGAGTGGAGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACAGTCTGTCAAAAATGGTTCTGCTTCAGGACCAACGTATTCAGGGAAGTTTGATGACAACAACATTTCAATTTCACCAGCCATGCTTGCAAGCTCACAAAACCCTCTTGAGTCCCACGCAGGCAGAGATATGCTACAAGATGCTGACATAACGAATAAAGTTGCACTTCCCTTGTCATTGGAAGGAAATATACATGCTTCTATCCGAAGTGACAGTGTTCTTGATCAATCTCTCCACATTCCCATTTCTGATGCACAGACAACGGAGTGTCCCATCACCAACAATGCATCAAGCCAACCAGAGGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGTCTTTATTCAGAAGGGTTATTAAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAACAAGGGAATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCGGCCACCCAGCAATGGCACATGTAGGGGACCTGGGCAGTGGAGACGACTCAGATCAAGCTAAAAAGCGGCTTAGGACATGA 999 45.25 MRTGKSNQEDEEYEEDELVAKREGPSSTSNANSSIGNSKDAKNNDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNNISISPAMLASSQNPLESHAGRDMLQDADITNKVALPLSLEGNIHASIRSDSVLDQSLHIPISDAQTTECPITNNASSQPEEMAIEGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPPSGHPAMAHVGDLGSGDDSDQAKKRLRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7064318 7069197 - Lag0004789.1 Lac6g0820 610589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0820 332 MobiDBLite consensus disorder prediction 44 62 - -
Lac6g0820 332 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Lac6g0820 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
Lac6g0820 332 FunFam BHLH domain class transcription factor 47 119 - -
Lac6g0820 332 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Lac6g0820 332 MobiDBLite consensus disorder prediction 23 43 - -
Lac6g0820 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 332 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Lac6g0820 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
Lac6g0820 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Lac6g0820 332 CDD bHLH_AtBIM_like 48 124 - -
Lac6g0820 332 MobiDBLite consensus disorder prediction 1 62 - -
Lac6g0820 332 MobiDBLite consensus disorder prediction 300 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g0411 Lac-Chr4:9499759 Lac6g0820 Lac-Chr6:7064318 5.60E-53 dispersed
Lac6g0820 Lac-Chr6:7064318 Lac3g0532 Lac-Chr3:4060332 3.50E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24019 PF00010 HLH 1.80E-13 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0820 - - - 0.0