Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0834 ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCCGGAGGTCTGATGATAGAGGCCTTGCACTTATTATGGCTTCTGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGCCGGCTAGCACAAAATCGTGAGGCTGCTAGGAAAAGCCGATTGAGGAAAAAAGCATATGTTCAACAATTAGAGAGCAGTCGTTTAAAGTTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAATTTTCATATCAAGCTCAGGTGACCAGACCCATTCAATGAGTGGAAATGGAGCCTTGGCATTTGATGCAGAATATGCTCGATGGCTTGAAGATCACAACCGTCAATTGAACGAATTGAGATCGGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTTGTCGATGGCATCTTGGTCCATTATGATGAGCTGTTCAGGCTCAAGGGAAATGCAGCAAAGGCTGATGTTTTCCATTTATTATCAGGCATGTGGATAACACCAGCAGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATCACAAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTATCGAGCGGATCCCTCGGCTCCTCTGGTTCGTCAGGGAACGTTGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTTGGGACGCTCGAGGGTTTTATACGCCAAGCCGACAATCTACGACAACAAACGCTTCAACAAATGCACCGAATATTGACAACTCGTCAGTCTGCTCGTGCGCTTCTCGCCATACACGATTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCCAGAGAGTAA 1002 47.6 MATEGSPRTDISTDGDTDEKSRRSDDRGLALIMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGALAFDAEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWITPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7189251 7193111 - Lag0004803.1 Lac6g0834 610603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0834 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0834 333 FunFam BZIP family transcription factor 47 96 - -
Lac6g0834 333 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0834 333 MobiDBLite consensus disorder prediction 1 49 - -
Lac6g0834 333 Coils Coil 67 94 - -
Lac6g0834 333 SMART brlzneu 44 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0834 333 Gene3D - 47 99 - -
Lac6g0834 333 MobiDBLite consensus disorder prediction 11 29 - -
Lac6g0834 333 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac6g0834 333 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0834 333 PANTHER TRANSCRIPTION FACTOR TGA9 22 333 - -
Lac6g0834 333 Coils Coil 124 144 - -
Lac6g0834 333 ProSiteProfiles DOG1 domain profile. 113 330 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac6g0834 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2236 Lac-Chr10:33883004 Lac6g0834 Lac-Chr6:7189251 8.40E-135 dispersed
Lac10g2555 Lac-Chr10:39547290 Lac6g0834 Lac-Chr6:7189251 6.60E-93 dispersed
Lac13g0769 Lac-Chr13:6107119 Lac6g0834 Lac-Chr6:7189251 2.20E-137 dispersed
Lac6g0834 Lac-Chr6:7189251 Lac8g1398 Lac-Chr8:30681784 1.10E-117 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24020 PF14144 DOG1 2.90E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0834 K14431 - csv:101213210 585.104