Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0867 ATGGCGTTGCAGAATATTGGTGCCTCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAAGATGGTTACTAAAATTGAAGGCAGAGGTAATGGTATTAAGACTAATGTGGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGACCTGCCTCTTACACTACCAAGTATTTTGGATGTGAGCTTGGTGCACAATCCAAGTTCGATGAGAAAACTGGGACTTCTCTTGTAAATGGTGCACATGATACAGCAAAGCTGGCTGGTCTTCTCGAGAACTTCATCAAGAAATACGTTCAATGCTATGGATGTGGAAACCCTGAAACTGAGATAATCATCACGAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCCGATGTTGACATGAGAGATAAACTCACAACATTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGTTCGAAGGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGGCTTAAGGAGGGAGAGGCTGCTGATGAGGAGCAGAAGAAGCTGAAAAAAGATTCCGTAAAGAAGAAAACCAGTACTACAAAGGATGCTGTTACCAAAGTGCCAAGCAAGAAGAAGAATAATGGCTCGGATGAGGATCATTCCCCAACTCGTAGCCAAGCTGGTGATAATGACCAAGCAGCTGATGACGATGGCGATGATGACGTGCAATGGCAAACAGATACATCTTTAGAGGCAGCTAAGCAGCGTATTCAGGAGCAGTTGAGTGCGGTCACTGCTGATATGGTCATGCTCTCCACTGCCGAAGAGAACAATAAGTCGTCAAAGAAGTCCCCCGAGCATGAAAAGTCTGCAGCCAATGGAAACAAGAATGGAAATGAAGTTTCTACTCATGGTGCCCTTGTTCATGAGATCAAAGATCATTTGAAGAAAGGTTCCTCCGCAGCCCAGCTTAAATCGATTTTGGAATCACTTTCTGGAACTCGCCAAGAGATTGTGAACGCCCTAGTCGAAGCTCTATTTGATGGTATTGGGAAAGGCTTCTCAAAGGAGGTGGTGAAGAAGAAGAACTTCTTGGCTGCAGTTGCTGCTCAGGAGGGATCACAGATAATTCTTTTGCGTGCCATCGAATCTTTCTGTCTCAATACAAGTCCGGATGCCGCTAAGGAGGTTGCTCTGGTTCTGAAATCACTATACGACGGGGATGTGATCGAAGAGGAATTTGTATTAGAGTGGTACCAGCAGGGCGTGGCCGGTGCCAACAAAAGCTCTCAAATCTGGAAGCACGTAAAGCCCTTCATCGAATGGCTCCAGAATGCCGAGTCGGAGTCGGAAGAAGAGTAA 1338 45.37 MALQNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKDSVKKKTSTTKDAVTKVPSKKKNNGSDEDHSPTRSQAGDNDQAADDDGDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTAEENNKSSKKSPEHEKSAANGNKNGNEVSTHGALVHEIKDHLKKGSSAAQLKSILESLSGTRQEIVNALVEALFDGIGKGFSKEVVKKKNFLAAVAAQEGSQIILLRAIESFCLNTSPDAAKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKHVKPFIEWLQNAESESEEE 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7596037 7597374 - Lag0004836.1 Lac6g0867 610636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0867 445 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac6g0867 445 MobiDBLite consensus disorder prediction 143 235 - -
Lac6g0867 445 Coils Coil 159 179 - -
Lac6g0867 445 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac6g0867 445 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Lac6g0867 445 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac6g0867 445 ProSiteProfiles W2 domain profile. 289 445 IPR003307 GO:0005515(InterPro)
Lac6g0867 445 MobiDBLite consensus disorder prediction 266 293 - -
Lac6g0867 445 SUPERFAMILY ARM repeat 297 439 IPR016024 -
Lac6g0867 445 MobiDBLite consensus disorder prediction 148 217 - -
Lac6g0867 445 CDD W2_eIF5 294 443 - -
Lac6g0867 445 Gene3D - 2 104 - -
Lac6g0867 445 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Lac6g0867 445 Gene3D - 289 445 - -
Lac6g0867 445 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 445 IPR003307 GO:0005515(InterPro)
Lac6g0867 445 SMART 542_3 354 441 IPR003307 GO:0005515(InterPro)
Lac6g0867 445 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Lac6g0867 445 Gene3D - 105 145 - -
Lac6g0867 445 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 441 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0867 K03262 - csv:101210873 755.362