Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0878 ATGGCTGCTTTGATGGATTTCTATGGTGGTTGCAGAGATTTTCAGTCAGATCCATTTGGTGGTGAATTAATGGAAGCGCTTGAACCTTTTATGAAAGCTGCTTCTTCTTCTTCTTCTTCTTTTCTTCCTTCTTATTCTCCTTCTTCTTCATCTTCCACTCCCGATTTCTCTTCTCCCTTCTGTTTCTCTTCTTCCATCCAAACAGAGTCCACTTCTTACCCTTCCGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGCGGGTTTTCGGCTCAAAACCTTCATGGTTTGGAACAATCGGCCTCGATTGGACTCAACTACTTGACTCCCTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACTCAGATTCAGCCAGTTTGGGGACAGATCAACAACCAGCAAGAGCTATTGAAAAACCAGACCAACGGCGTGAATTTGCTTGGTCCGAAGGCGATTCCGATGAAACATGTGGGATCTCCACCGAAATCGACGAAGCTTTATCGTGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCTGAGATCCGTCTACCGAGGAACCGAACTCGGCTATGGCTCGGCACCTTCGATACCGCCGAAGAAGCCGCTTTAGCCTACGACAAAGCCGCTTACAAGCTCCGAGGCGATTTCGCCAGACTCAATTTCCCTCACCTGAAGCACAACGGCTCCTCCGTCGGCGGCGATTTCGGCGAGTACAAGCCGCTCCACTCCGCCGTCGACGCGAAGCTCGAAGCCATCTGTCAATCCCTGGCAGAGTCGCAAAAACAGGGGAAATCGGACCGATCTGCCTCGAGGAAGTCGAAATCGGCTTCTTCCACGGTTGGATCGGAGTCTCAGGCGCCGACGGTGATCGATTCCGACGACGAACAGAAGGCGGCGGAGGTCAGATCGAGTGGATCGGAGATCTGTTGTAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGCGACGAGTCGGCAGGGTCTTCGCCTTTGTCGGATCTGACGTTCCCCGATCCGACGGATTCGCCATGGGAACAGCCATCGGAAAGCTCTATGTTGCAGAAATATCCGTCGGAAATCGATTGGGCTTCGATTTTCACATCATGA 1122 51.96 MAALMDFYGGCRDFQSDPFGGELMEALEPFMKAASSSSSSFLPSYSPSSSSSTPDFSSPFCFSSSIQTESTSYPSDCSPPMTHLFSGGFSAQNLHGLEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQQELLKNQTNGVNLLGPKAIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHNGSSVGGDFGEYKPLHSAVDAKLEAICQSLAESQKQGKSDRSASRKSKSASSTVGSESQAPTVIDSDDEQKAAEVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDPTDSPWEQPSESSMLQKYPSEIDWASIFTS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7713336 7714457 + Lag0004847.1 Lac6g0878 610647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0878 373 PRINTS Ethylene responsive element binding protein signature 192 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0878 373 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0878 373 MobiDBLite consensus disorder prediction 312 361 - -
Lac6g0878 373 ProSiteProfiles AP2/ERF domain profile. 169 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0878 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 18 370 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac6g0878 373 SMART rav1_2 169 232 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0878 373 MobiDBLite consensus disorder prediction 262 361 - -
Lac6g0878 373 MobiDBLite consensus disorder prediction 276 295 - -
Lac6g0878 373 SUPERFAMILY DNA-binding domain 169 227 IPR016177 GO:0003677(InterPro)
Lac6g0878 373 CDD AP2 168 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0878 373 Pfam AP2 domain 169 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0878 373 Gene3D AP2/ERF domain 169 227 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g0878 373 FunFam Ethylene-responsive transcription factor 2 168 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2000 Lac-Chr11:35548426 Lac6g0878 Lac-Chr6:7713336 5.30E-27 dispersed
Lac12g2046 Lac-Chr12:37547846 Lac6g0878 Lac-Chr6:7713336 4.80E-28 dispersed
Lac4g1501 Lac-Chr4:33699977 Lac6g0878 Lac-Chr6:7713336 1.70E-67 dispersed
Lac5g2224 Lac-Chr5:40888013 Lac6g0878 Lac-Chr6:7713336 5.80E-31 dispersed
Lac6g0878 Lac-Chr6:7713336 Lac9g2150 Lac-Chr9:41019618 1.60E-27 dispersed
Lac2g0878 Lac-Chr2:6927629 Lac6g0878 Lac-Chr6:7713336 2.20E-90 transposed
Lac1g2842 Lac-Chr1:49454152 Lac6g0878 Lac-Chr6:7713336 3.60E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24023 PF00847 AP2 5.00E-15 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0878 K09286 - csv:101222833 536.954