Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0892 ATGGATTCGATAGCAGAAGAGAAAACAACAATAAATTGGGAATCAAAATTGGGATTAAGAGATGAACTTGCTGCCGAGACGCTTTCTTCTGAGCCTCATTCTCACGTAATTTCTCCTATGTTCATCGCCCCACTAAGCAGCGTCGACGCCTTTAGCGAGAATCACTGCCGGAGGGTGTTGAAAAGGGCATTTGGATCGCTAAGAGGGGATTTTGGTGGCGATGAAGAACTGAGAAGCGAGCGGCAGAGCGGTGGTGGGGCAGAGGAGAATGTGGTTGAGCATTCGAAGAGAGGCTCCGACGGCGACGGGAGGAGGCTCAAGCGAGTGGGAAGAAGAAGAGAGAAGGTGAGGGAGAGAGGAGGGTTTCGGCTCGGAGGAGAAACAGGGGAGATTGACGTCACAGTCCCCACACGGACCGTCACCAACGCCTTTTTCTTTTGGTCTCATTTCCTTCCTTGTGTTTCCCATCACGCCGCTGATTCAACATCAAAACCATCCAACGGCTCATATCGTCCAACACGAGACTCAACGCTCAAAACCCAATCGCAGCCGTCCACAACACCCAAGATTCTCCACTACACTCCATCCGACGGTCACCACACGAACTACAGTGTATTAGGAAGCGGTTATAGAGCTCCGGCCATGGAGAAGGAGAGGGAGCAGCTTGTTTACTTGGCCAGACTTGCCGAACAAGCAGAGAGATACGACGAAATGGTGGAAATGATGAAGAGTGTAGCGAAGTTGGACGTAGAACTTACTGTGGAGGAGAGGAACCTGGTCTCTGTGGGATATAAGAACGTTATTGGGGCGAGAAGAGCCTCATGGCGTATTTTATCTTCTATTGAACAAAAGGAGGAAGGAAAGAAGAATGAGGTTAATGTGAAGAGGGTAAAGGAGTACAGGCAGAGGGTTGAAGACGAACTTGCGAGAATTTGCCACGACATCTTATCAGTCGTTGACAAGCATCTCATTCCATCGTCATCCTCCGGAGAATCCAATGTTTTTTACTACAAGATGAAAGGGGATTATAACCGATACTTGGCAGAGTTTAAATCTGGCCAAGAACGTGAAGAGGCTGCAGATCAGTCGATGAAGGCCTATGAGTCTGCCTCAAGCATTGCAACCTCTGATCTGCCTCCAACACATCCCATCAGACTTGGCTTGGCGCTTAACTTTTCTGTTTTCTACTATGAGATATTAAATTCCCCTGAGAGGGCATGCCACCTTGCTAAACAAGCTTTTGATGATGCTATAGCTGAGCTCGACGGCCTCAATGAAGAATCCTACAAGGACAGTACCCTCATCATGCAGCTGCTGAGGGATAATCTCACGTTATGGACCTCGGATCTCCCAGATGAGGGAGGTGAGCAATCTAAAGCTGCTGATGAACCTTGA 1395 48.67 MDSIAEEKTTINWESKLGLRDELAAETLSSEPHSHVISPMFIAPLSSVDAFSENHCRRVLKRAFGSLRGDFGGDEELRSERQSGGGAEENVVEHSKRGSDGDGRRLKRVGRRREKVRERGGFRLGGETGEIDVTVPTRTVTNAFFFWSHFLPCVSHHAADSTSKPSNGSYRPTRDSTLKTQSQPSTTPKILHYTPSDGHHTNYSVLGSGYRAPAMEKEREQLVYLARLAEQAERYDEMVEMMKSVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEGKKNEVNVKRVKEYRQRVEDELARICHDILSVVDKHLIPSSSSGESNVFYYKMKGDYNRYLAEFKSGQEREEAADQSMKAYESASSIATSDLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDDAIAELDGLNEESYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSKAADEP 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7867681 7871823 - Lag0004861.1 Lac6g0892 610661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0892 464 SUPERFAMILY 14-3-3 protein 218 449 IPR036815 -
Lac6g0892 464 MobiDBLite consensus disorder prediction 157 198 - -
Lac6g0892 464 PANTHER 14-3-3 PROTEIN 218 452 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Lac6g0892 464 SMART 1433_4 219 460 IPR023410 -
Lac6g0892 464 ProSitePatterns 14-3-3 proteins signature 2. 429 448 IPR023409 -
Lac6g0892 464 ProSitePatterns 14-3-3 proteins signature 1. 257 267 IPR023409 -
Lac6g0892 464 MobiDBLite consensus disorder prediction 90 107 - -
Lac6g0892 464 PRINTS 14-3-3 protein zeta signature 300 324 IPR000308 -
Lac6g0892 464 PRINTS 14-3-3 protein zeta signature 366 392 IPR000308 -
Lac6g0892 464 PRINTS 14-3-3 protein zeta signature 331 353 IPR000308 -
Lac6g0892 464 PRINTS 14-3-3 protein zeta signature 251 280 IPR000308 -
Lac6g0892 464 PRINTS 14-3-3 protein zeta signature 420 449 IPR000308 -
Lac6g0892 464 PRINTS 14-3-3 protein zeta signature 393 419 IPR000308 -
Lac6g0892 464 MobiDBLite consensus disorder prediction 159 198 - -
Lac6g0892 464 Gene3D - 199 460 IPR036815 -
Lac6g0892 464 MobiDBLite consensus disorder prediction 71 114 - -
Lac6g0892 464 FunFam 14-3-3 protein epsilon 215 460 - -
Lac6g0892 464 Pfam 14-3-3 protein 225 447 IPR023410 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0892 Lac-Chr6:7867681 Lac6g0913 Lac-Chr6:8083447 2.10E-90 dispersed
Lac6g0892 Lac-Chr6:7867681 Lac6g0895 Lac-Chr6:7895180 1.20E-130 proximal
Lac12g0775 Lac-Chr12:8129676 Lac6g0892 Lac-Chr6:7867681 2.70E-108 transposed
Lac13g0369 Lac-Chr13:2618890 Lac6g0892 Lac-Chr6:7867681 1.00E-108 transposed
Lac4g2818 Lac-Chr4:46812422 Lac6g0892 Lac-Chr6:7867681 1.40E-57 transposed
Lac6g0798 Lac-Chr6:6836645 Lac6g0892 Lac-Chr6:7867681 1.30E-88 transposed
Lac6g1466 Lac-Chr6:17618535 Lac6g0892 Lac-Chr6:7867681 9.50E-57 transposed
Lac2g0726 Lac-Chr2:5596419 Lac6g0892 Lac-Chr6:7867681 4.20E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0892 K06630 - csv:101222677 459.144