Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0931 ATGATGGCATTGGAAACTGTGGTTTACCCACAACATACATTCAGTTATGTTTGCAGAGATTTCTGTTCTTACTCTGGACCTTGCCCCGCCTACGATTACGCCTTCCAATTAGACCAAGAAAAAACCTTTCTTGGAGACGACCAAAAATTGCCTGCCAATTGGGACGCTTCGCCGGAGGAATGTTCCATCAATCAGCCGCTCCCCGGAGGTCCTCTGTACCCGCCGGTGGAAGTCCAACCCCCGCCGCCGCCGACTACCGGCAGGAGAAAGCGGCGGCGGACTCGGAGCACGAAAAACAAGGAGGAAATTGAAAACCAGAGGATGACCCACATCGCCGTCGAGCGCAACCGCCGGAAACAAATGAATGATTATCTGGCCGTCCTCCGATCACTAATGCCGTCTTCTTACGTTCAAAGGGGAGACCAAGCCTCCATTATTGGTGGCGCCATTAACTTTGTCAAGGAATTAGAGCAACAATTGCAATTCATCAAGGCCCATAAGGAAACAGCTTCTTCCTCCCCAATTGAAAGTAACGCTTCTCCTTTCGCCGACTTCTTTTCCTTTCCTCAGTTCTCAACTCGTGCGACTCAGTGCAAGAACTCGGGCCATGACTCGGCCATGCCGGCTCACACCCAATGGGCCGCCGGAGATATTGAAGTCACCATGGTCGACACCCATGCCAACCTTAAAATACTGTCCCAGAAACGCCCTAGGCAGCTTCTCAAAATGGTGGCTGGGTTTCAAAGCTTGAGACTCACTATTCTTCATCTCAATGTCACCACTTTGGATCAAATGGTTCTTTACTCTGTGAGCATCAAGGTTGAGGAAGGATGCCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTTTCCATACAAGAGGAAGCTGCTTTCAGCTGA 915 49.84 MMALETVVYPQHTFSYVCRDFCSYSGPCPAYDYAFQLDQEKTFLGDDQKLPANWDASPEECSINQPLPGGPLYPPVEVQPPPPPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNDYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKAHKETASSSPIESNASPFADFFSFPQFSTRATQCKNSGHDSAMPAHTQWAAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTLDQMVLYSVSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAAFS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8261699 8263056 - Lag0004900.1 Lac6g0931 610700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0931 304 Pfam Helix-loop-helix DNA-binding domain 106 157 IPR011598 GO:0046983(InterPro)
Lac6g0931 304 MobiDBLite consensus disorder prediction 48 104 - -
Lac6g0931 304 MobiDBLite consensus disorder prediction 68 85 - -
Lac6g0931 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 171 IPR036638 GO:0046983(InterPro)
Lac6g0931 304 PANTHER MAX DIMERIZATION, MAD 62 294 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g0931 304 Coils Coil 153 173 - -
Lac6g0931 304 Gene3D - 89 171 IPR036638 GO:0046983(InterPro)
Lac6g0931 304 SMART finulus 111 162 IPR011598 GO:0046983(InterPro)
Lac6g0931 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2424 Lac-Chr11:40474576 Lac6g0931 Lac-Chr6:8261699 4.00E-51 dispersed
Lac6g0931 Lac-Chr6:8261699 Lac6g2660 Lac-Chr6:44317132 3.70E-59 dispersed
Lac6g0931 Lac-Chr6:8261699 Lac4g1294 Lac-Chr4:30985873 5.70E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24025 PF00010 HLH 2.10E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0931 - - - 0.0