Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0980 ATGGAATTCGACGACGAGCACGAAGACCAAGACGATGAAATAATGGAAGAGATGCCCATCGCCCACCACTACGACTCGCTCGGTAACTCAGCTTCGACTCGGCCGAAACCCGGAGAGGGGTCATCGGCGGCGAGGAAGAGCGGCGGCGGCGGAGGGAATATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGGCACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAGGAAGGGAGTATAGACGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACCGATTCAGATCAGGGACATTACTACTACCACCACCACCACCACCAGCAACAGTTTTCTTCTTACCGTGGGCCCCCACAGCCGTCGGCTTACGTGTACTTGACGGGGGCCCCAGTTCAGCAGAGGCCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGACGACACGTCGAATCCGAGCAGCAGCGGCGGCGGAGGAGGAGGCGGCGGAGGAAGTGGGTTGTTGAAGAAGAGATTCAGGACAAAGTTCAGCCAAGAGCAGAAGGAGAAAATGTTAGGGTTTGCAGAGAAAGTGGGATGGACAATTCAGAAACACGACGAAGCTGACGTGGAACGGTTCTGCTCGGAGACCGGAGTCCGACGGCAGGTTCTAAAGGTATGGATGCACAACAACAAGCATACTTTAGGGAAGAAACCCTAG 744 56.99 MEFDDEHEDQDDEIMEEMPIAHHYDSLGNSASTRPKPGEGSSAARKSGGGGGNIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHHHHHQQQFSSYRGPPQPSAYVYLTGAPVQQRPLALPAAAASGREEDDTSNPSSSGGGGGGGGGSGLLKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVERFCSETGVRRQVLKVWMHNNKHTLGKKP 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8846096 8846839 - Lag0004949.1 Lac6g0980 610749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0980 247 MobiDBLite consensus disorder prediction 1 15 - -
Lac6g0980 247 MobiDBLite consensus disorder prediction 1 52 - -
Lac6g0980 247 NCBIfam homeobox domain, ZF-HD class 184 240 IPR006455 -
Lac6g0980 247 Gene3D - 168 245 - -
Lac6g0980 247 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Lac6g0980 247 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 242 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac6g0980 247 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Lac6g0980 247 FunFam Zinc-finger homeodomain protein 2 179 245 - -
Lac6g0980 247 SUPERFAMILY Homeodomain-like 169 245 IPR009057 -
Lac6g0980 247 MobiDBLite consensus disorder prediction 151 183 - -
Lac6g0980 247 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0980 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2376 Lac-Chr13:37794229 Lac6g0980 Lac-Chr6:8846096 1.70E-43 dispersed
Lac5g1919 Lac-Chr5:37506557 Lac6g0980 Lac-Chr6:8846096 3.10E-44 dispersed
Lac6g0418 Lac-Chr6:3408879 Lac6g0980 Lac-Chr6:8846096 1.70E-43 dispersed
Lac6g0980 Lac-Chr6:8846096 Lac8g2681 Lac-Chr8:44329078 2.20E-33 dispersed
Lac6g0980 Lac-Chr6:8846096 Lac1g2792 Lac-Chr1:49009692 1.60E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24026 PF04770 ZF-HD_dimer 2.60E-30 No_clan Lac TF