Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0980 ATGGAATTCGACGACGAGCACGAAGACCAAGACGATGAAATAATGGAAGAGATGCCCATCGCCCACCACTACGACTCGCTCGGTAACTCAGCTTCGACTCGGCCGAAACCCGGAGAGGGGTCATCGGCGGCGAGGAAGAGCGGCGGCGGCGGAGGGAATATTAGATATAGAGAGTGTTTGAAGAATCACGCCATCGGAATCGGCGGGCACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAGGAAGGGAGTATAGACGCACTGAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACCGATTCAGATCAGGGACATTACTACTACCACCACCACCACCACCAGCAACAGTTTTCTTCTTACCGTGGGCCCCCACAGCCGTCGGCTTACGTGTACTTGACGGGGGCCCCAGTTCAGCAGAGGCCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGACGACACGTCGAATCCGAGCAGCAGCGGCGGCGGAGGAGGAGGCGGCGGAGGAAGTGGGTTGTTGAAGAAGAGATTCAGGACAAAGTTCAGCCAAGAGCAGAAGGAGAAAATGTTAGGGTTTGCAGAGAAAGTGGGATGGACAATTCAGAAACACGACGAAGCTGACGTGGAACGGTTCTGCTCGGAGACCGGAGTCCGACGGCAGGTTCTAAAGGTATGGATGCACAACAACAAGCATACTTTAGGGAAGAAACCCTAG 744 56.99 MEFDDEHEDQDDEIMEEMPIAHHYDSLGNSASTRPKPGEGSSAARKSGGGGGNIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHHHHHQQQFSSYRGPPQPSAYVYLTGAPVQQRPLALPAAAASGREEDDTSNPSSSGGGGGGGGGSGLLKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVERFCSETGVRRQVLKVWMHNNKHTLGKKP 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8846096 8846839 - Lag0004949.1 Lac6g0980 610749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0980 247 MobiDBLite consensus disorder prediction 1 15 - -
Lac6g0980 247 MobiDBLite consensus disorder prediction 1 52 - -
Lac6g0980 247 NCBIfam homeobox domain, ZF-HD class 184 240 IPR006455 -
Lac6g0980 247 Gene3D - 168 245 - -
Lac6g0980 247 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Lac6g0980 247 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 242 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac6g0980 247 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Lac6g0980 247 FunFam Zinc-finger homeodomain protein 2 179 245 - -
Lac6g0980 247 SUPERFAMILY Homeodomain-like 169 245 IPR009057 -
Lac6g0980 247 MobiDBLite consensus disorder prediction 151 183 - -
Lac6g0980 247 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2376 Lac-Chr13:37794229 Lac6g0980 Lac-Chr6:8846096 1.70E-43 dispersed
Lac5g1919 Lac-Chr5:37506557 Lac6g0980 Lac-Chr6:8846096 3.10E-44 dispersed
Lac6g0418 Lac-Chr6:3408879 Lac6g0980 Lac-Chr6:8846096 1.70E-43 dispersed
Lac6g0980 Lac-Chr6:8846096 Lac8g2681 Lac-Chr8:44329078 2.20E-33 dispersed
Lac6g0980 Lac-Chr6:8846096 Lac1g2792 Lac-Chr1:49009692 1.60E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24026 PF04770 ZF-HD_dimer 2.60E-30 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0980 - - - 0.0