Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g0985 | ATGGCGCCGGGTTTTGACCTTGCTGTTTCGAACCTTTTATGCGCTGAAGACAATTGCATTTTCGATAATCACGATGATGATGATGAAACAGTAGTTGATGAGGAGTTTGTGGTGGCTCCTTATTTTCTTAGAAGTAGTGGGTCTCAGAGTCGTCGCTATCGGAGCCTCCACGGCGGCGGTTGCGGCGGCGATGGGTTCCCGTTTTTGAGCGATGAATGTTTGATTGGAATGGTTGAGAAGGAAACCCAGCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGAGTTGGATGTTGGAGCCAGAAAAGAGGCCGTCGATTGGATTGAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTAGCTGTAAACTACTTGGATCGTTTCCTCTCCGCTTACGATCTACCCAAAGGCAAAGCTTGGACAATGCAGTTGCTGGCTGTGGCATGTATGTCCCTAGCAGCCAAATTGGAGGAGACTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACCACATTGGGGTGGAGAATGCAAGCAGTTACCCCTTTCTCGTTTATCGATCATTACCTCCACAAGATTCACGACGACGAACTCGCTGTCAAAATGTCGATCACCCGATCGATACACCTACTCTTGACCATAATACAAGGGATCGACTTCTTGGAATTCAAGCCTTCTGAGATTGCAGCAGCTGTGGCAATATCAGTAGCTGGAGAAGCTCAAGCAGTGGACCCTGAAAGAGCCATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGCATTAAACTAATCAACGACATGTCGTTAGTCTGCGGGAGAGCGTCGATGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGCTTGAGCTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCACATCATAACAGCTCAGATGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG | 1077 | 47.73 | MAPGFDLAVSNLLCAEDNCIFDNHDDDDETVVDEEFVVAPYFLRSSGSQSRRYRSLHGGGCGGDGFPFLSDECLIGMVEKETQHLPVDGYLVKLQNGELDVGARKEAVDWIEKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLHKIHDDELAVKMSITRSIHLLLTIIQGIDFLEFKPSEIAAAVAISVAGEAQAVDPERAIPLLIQQLQMERVLKCIKLINDMSLVCGRASMSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHNSSDATKRRRLNRPCEVEL | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 8916746 | 8918720 | - | Lag0004954.1 | Lac6g0985 | 610754 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g0985 | 358 | Gene3D | - | 87 | 204 | - | - | |
| Lac6g0985 | 358 | SUPERFAMILY | Cyclin-like | 189 | 300 | IPR036915 | - | |
| Lac6g0985 | 358 | Pfam | Cyclin, C-terminal domain | 206 | 298 | IPR004367 | - | |
| Lac6g0985 | 358 | Pfam | Cyclin, N-terminal domain | 77 | 203 | IPR006671 | - | |
| Lac6g0985 | 358 | SUPERFAMILY | Cyclin-like | 68 | 203 | IPR036915 | - | |
| Lac6g0985 | 358 | CDD | CYCLIN_AtCycD-like_rpt1 | 103 | 201 | - | - | |
| Lac6g0985 | 358 | SMART | cyclin_7 | 109 | 197 | IPR013763 | - | |
| Lac6g0985 | 358 | FunFam | D2/4-type cyclin | 87 | 202 | - | - | |
| Lac6g0985 | 358 | CDD | CYCLIN_AtCycD-like_rpt2 | 206 | 294 | - | - | |
| Lac6g0985 | 358 | Gene3D | - | 77 | 290 | - | - | |
| Lac6g0985 | 358 | FunFam | D6-type cyclin | 203 | 292 | - | - | |
| Lac6g0985 | 358 | SMART | Cyclin_C_2 | 206 | 324 | IPR004367 | - | |
| Lac6g0985 | 358 | MobiDBLite | consensus disorder prediction | 332 | 352 | - | - | |
| Lac6g0985 | 358 | PANTHER | CYCLINS | 80 | 296 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0233 | Lac-Chr13:1657789 | Lac6g0985 | Lac-Chr6:8916746 | 4.90E-44 | dispersed | |
| Lac1g2603 | Lac-Chr1:47369769 | Lac6g0985 | Lac-Chr6:8916746 | 2.40E-36 | dispersed | |
| Lac1g2790 | Lac-Chr1:48993907 | Lac6g0985 | Lac-Chr6:8916746 | 1.90E-81 | dispersed | |
| Lac2g0355 | Lac-Chr2:2675840 | Lac6g0985 | Lac-Chr6:8916746 | 6.50E-39 | dispersed | |
| Lac5g2566 | Lac-Chr5:44214406 | Lac6g0985 | Lac-Chr6:8916746 | 6.50E-37 | dispersed | |
| Lac6g0280 | Lac-Chr6:2263960 | Lac6g0985 | Lac-Chr6:8916746 | 1.70E-42 | dispersed | |
| Lac6g0985 | Lac-Chr6:8916746 | Lac9g2113 | Lac-Chr9:40781493 | 1.70E-31 | dispersed | |
| Lac6g0985 | Lac-Chr6:8916746 | Lac6g0031 | Lac-Chr6:306800 | 3.50E-48 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g0985 | K18810 | - | csv:101216206 | 587.8 |