Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0987 ATGCCTCCACTGGGTGTGCAACTCTTCATTACAGAACGTCAGGTGAGGTTGGATAATGGCATAGTCCAAGTCACATTATCAAAACCAGATGGCTTAGTGACCGGAATTCGATACAATGGAGTCGACAACTTGCTCGAAGTTCTCAACGATGAATCTAATCGAGGGTACTGGGACCTCGTGTGGAACCCATCAGCCTCAACAACTGGATCGTTTGATGTGATAAAGGCTACAGGTTTTGATGTTATAGTGGAAAATGAAGACCAAGTGGAGCTCTCCTTTACAAGAAAATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAAATTGATAAAAGGTTTATAATGCTTCGGGGTTCGCCTGGATTCTATTCTTATGCTATTTACCAACACTTGAAAGAATGGCCTGCTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTCCGTTATATGGCCATGGCAGACAACAGACAGAGATCCATGCCGCTTCCAGATGACCGGTCTCCGCCGAGAGGCCGAGCCCTGGCCTATCCGGAGGCTGTCCTGCTCGTCGACCCCGTCGAACCGGAGCTCCAGGGAGAGGTGGATGACAAATATCAATATTCATGCGACAACAAAGACAGCGGCGTCCATGGATGGATATCCACCGACCCGCCAGTCGGATTCTGGCTAATCACCCCCAGCAACGAGTTCCGGTCCGGTGGACCCGTTAAACAGAACCTGACTTCACACGTCGGCCCAACCACCCTTGCTGTTTTTATTAGCGCCCATTACGCGGGAGAGGATCTCGTGCCCAAAATTGGAGCCGGCGAGGAGTGGAAGAAAGTTTTCGGTCCTGTGTTTATCTATCTCAACTCCACTTACGATTCCAGCGACGCACTTCTGCTATGGGAAGATGCCAAAGCACAGGCGACGATTGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGAGGATTTTCCAAAGCCAAACCAACGGGGTAACATCAGTGGTAGACTCTTAGTCAAAGATAGCTACGTTAGTGAAGACTCCATACCAGCAAACGGTGCGTTTGTTGGGTTAGCTCCACCAGGAGACGTAGGATCATGGCAAAGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAGAGTGGATATTTTTTCATCGACGGCGTAAGGCCCGGCGACTACAATCTGTATGCATGGGTCCCCGGTTTTATTGGAGATTATCGTTACGATGCTCTCATCAACATTACAGAAGGTAGTCAGATAGACGTGGGTGACATAACATATGAGCCTCCAAGAGAAGGGGATACACTATGGGAAATTGGAGTCGCCGATCGCTCAGCAGCGGAATTCTTTGTTCCAGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGGCAGTACGGTCTGTGGGAAAGGTACAGTGAATTGTATCCCGACGCAGACTTGGTATATACTGTTGGCGTTAGTGATTACACTAAGGATTGGTTCTTCGCTCAGGTCCCCAGGAAGACAGATAGCGGAACATTCAAGGGAACAACATGGCAAGTGAAGTTCAAGCTGGATAACGTGGACAACAAAGCAACTTACAAGCTTCGGATCGCATTGGCCTCCGCTTCTCTCGCGGAATTGCAGGTTGGAGTAAATGACCCAAAAGCAAAGCCGGTGTTCTCGAGTGGACTGATCGGAAGGGATAATTCGATCGCCAGGCACGGCATTCACGGGCTGCACTGGCTTTACCACGTGGATATTCCGGGCAACCGACTGGTTACCGGCTACAACACCATCTTCTTCACACAGCCCAGAAGCGCAGGCCCTTTCCAAGCCATTATGTACGATTACATTCGTCTGGAAGCTCCTCTACCTCCATCCTTCGCCCGTAAGACTTTGGAATAA 1929 49.14 MPPLGVQLFITERQVRLDNGIVQVTLSKPDGLVTGIRYNGVDNLLEVLNDESNRGYWDLVWNPSASTTGSFDVIKATGFDVIVENEDQVELSFTRKWDLSLEGKLVPLEIDKRFIMLRGSPGFYSYAIYQHLKEWPAFNLGETRLAFKLRKDKFRYMAMADNRQRSMPLPDDRSPPRGRALAYPEAVLLVDPVEPELQGEVDDKYQYSCDNKDSGVHGWISTDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSSDALLLWEDAKAQATIEVQSWPYSFPASEDFPKPNQRGNISGRLLVKDSYVSEDSIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADESGYFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSQIDVGDITYEPPREGDTLWEIGVADRSAAEFFVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVSDYTKDWFFAQVPRKTDSGTFKGTTWQVKFKLDNVDNKATYKLRIALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLHWLYHVDIPGNRLVTGYNTIFFTQPRSAGPFQAIMYDYIRLEAPLPPSFARKTLE 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8946403 8952333 + Lag0004956.1 Lac6g0987 610756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0987 642 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Lac6g0987 642 FunFam Rhamnogalacturonate lyase B 329 428 - -
Lac6g0987 642 SUPERFAMILY Starch-binding domain-like 330 429 IPR013784 GO:0030246(InterPro)
Lac6g0987 642 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
Lac6g0987 642 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Lac6g0987 642 Gene3D - 7 300 IPR014718 GO:0030246(InterPro)
Lac6g0987 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 631 IPR051850 -
Lac6g0987 642 CDD RGL4_M 332 431 IPR029413 -
Lac6g0987 642 Gene3D - 330 428 - -
Lac6g0987 642 SUPERFAMILY Galactose mutarotase-like 20 292 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lac6g0987 642 CDD RGL4_C 443 629 - -
Lac6g0987 642 Gene3D - 438 629 - -
Lac6g0987 642 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Lac6g0987 642 CDD RGL4_N 13 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0797 Lac-Chr2:6237042 Lac6g0987 Lac-Chr6:8946403 3.80E-258 dispersed
Lac2g0798 Lac-Chr2:6247878 Lac6g0987 Lac-Chr6:8946403 4.60E-293 dispersed
Lac5g1848 Lac-Chr5:36687020 Lac6g0987 Lac-Chr6:8946403 1.60E-221 dispersed
Lac1g3205 Lac-Chr1:52095092 Lac6g0987 Lac-Chr6:8946403 2.30E-199 transposed
Lac1g2760 Lac-Chr1:48756583 Lac6g0987 Lac-Chr6:8946403 2.80E-211 wgd
Lac2g0796 Lac-Chr2:6230649 Lac6g0987 Lac-Chr6:8946403 1.30E-260 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0987 K18195 - csv:101215720 1198.73