Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0994 ATGTACGGACGCGCTCAATCGCTGACCATGGGCGATCAGATCGCCTCCGGCCCCGACTGTGGCGACAGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGAAGCACACTCTCTCGAAGACGGTGCTGGAGTAGGCGGTATCATCGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCCGACATGGCTATTCAACGCGGCGATGGTTCAAGCCAGCTCACACTTTCGTTCCGTGGCCAAGTTTATCTTTTTGACGCCGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTGTCTTCTGGGCAGCAAAGTGTGGATTTGGTAAATCAGAATCAGAGGAATGCTGTGGATTTCCCCGGACGCAGTAGTCAGCCGCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGTAGTGTCTCAGAGTCAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCGACCCCAATGATGCGGCGAGGACCGTCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCCGGCCGAGCAGCTGAGCATTAGAAATTACGTTTGTTACAGAAAAAAGGCCACCATGGCTGTTTCTGGCTTCATTCAATCCGGCCCTCGTTTTGCCGTTGGATCTGATTATAAAAAAACAATCCTTCAGTGGGATTTCACACACTGCCGGCCCACAAGTCCATCGCCCTTGACACCCGTTGACGAATGTGAACCGTCAAATCATGTGGGTCCCATCGCACATCAGATTTCTTATTTAAACAAACGGCTGCAGATGAGGGCTCCACAGATGTCGTTTAGGGCTTTCGACAAATTGATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACACGTCCAAGTTCCTACAATGATTGGGGATGACGACGGTGAATATGAAGATGGTGGAGGTGGCGGCGGCGGCGGCGGCGGCGGCGACGTTATGGATGATGTCGAAGAGGCTCATATGACCTCGGTGAGCGTCGCGAACCATGGAGGTTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAAGGCGAGGTTTATGTGTTCCCGGCAGTTACTCCCGAAAAGGTACAAGCGGTGCTCTTACTTTTGGGAGGGCGTGATGTGCCAAGTGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTCGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCCGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACATTGAGAGATCTCAGCAAGGGAGGGAGAAGTGTGTCTCTGGATCATTTGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGTATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCGAGTAATCCTTCCGTTGACCCGGATGAGGAAGACATAAATGAAACTACTGGAGAACTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGACTAGAGGTCCTGTCCGCAGAGATGGCTGGGGAGATTACAAAAAGGTTTTCCTATTTCCAGCCATCCAAATCCATGCAAAGTGTCTTCATGTAGGTTCCAAAAGGCATTCTTCCCACAACATCGACCGTCGATAG 2199 49.16 MYGRAQSLTMGDQIASGPDCGDSGEPLDNRLVRYEAHSLEDGAGVGGIIEDLNPDAVYASAGDGSDMAIQRGDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSESGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQLSIRNYVCYRKKATMAVSGFIQSGPRFAVGSDYKKTILQWDFTHCRPTSPSPLTPVDECEPSNHVGPIAHQISYLNKRLQMRAPQMSFRAFDKLMAAANPQPLQARPFQEHVQVPTMIGDDDGEYEDGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPSGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSVSLDHLEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSVDPDEEDINETTGELTNSLPMRIVNHSTNGDEQTRGPVRRDGWGDYKKVFLFPAIQIHAKCLHVGSKRHSSHNIDRR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9064462 9080646 - Lag0004963.1 Lac6g0994 610763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0994 732 MobiDBLite consensus disorder prediction 171 209 - -
Lac6g0994 732 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Lac6g0994 732 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 556 606 - -
Lac6g0994 732 ProSitePatterns GATA-type zinc finger domain. 561 588 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 Pfam tify domain 74 105 IPR010399 -
Lac6g0994 732 Pfam tify domain 425 456 IPR010399 -
Lac6g0994 732 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 250 - -
Lac6g0994 732 ProSiteProfiles Tify domain profile. 422 457 IPR010399 -
Lac6g0994 732 ProSiteProfiles GATA-type zinc finger domain profile. 555 603 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 Gene3D - 197 256 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac6g0994 732 SMART tify_2 71 106 IPR010399 -
Lac6g0994 732 SMART tify_2 422 457 IPR010399 -
Lac6g0994 732 MobiDBLite consensus disorder prediction 126 142 - -
Lac6g0994 732 Pfam GATA zinc finger 561 597 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 MobiDBLite consensus disorder prediction 599 668 - -
Lac6g0994 732 Gene3D - 557 607 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac6g0994 732 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Lac6g0994 732 Pfam CCT motif 490 531 IPR010402 GO:0005515(InterPro)
Lac6g0994 732 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Lac6g0994 732 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 MobiDBLite consensus disorder prediction 126 146 - -
Lac6g0994 732 PANTHER GATA TRANSCRIPTION FACTOR 28 378 681 IPR045280 GO:0006355(InterPro)
Lac6g0994 732 CDD ZnF_GATA 205 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 SMART GATA_3 555 608 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 MobiDBLite consensus disorder prediction 1 22 - -
Lac6g0994 732 CDD ZnF_GATA 560 608 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 ProSiteProfiles CCT domain profile. 490 532 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0994 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0090 Lac-Chr12:1045120 Lac6g0994 Lac-Chr6:9064462 1.50E-63 dispersed
Lac4g3088 Lac-Chr4:48998808 Lac6g0994 Lac-Chr6:9064462 3.90E-55 dispersed
Lac6g0994 Lac-Chr6:9064462 Lac10g0096 Lac-Chr10:742038 3.60E-07 transposed
Lac6g0994 Lac-Chr6:9064462 Lac3g0598 Lac-Chr3:4642751 3.60E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g3088 . 1 230 Tify Gene Family AT3G21175 57.4 5.4e-60 228.4
Lac6g0994 . 47 266 Tify Gene Family AT4G24470 59.1 4.3e-66 249.2
Lac12g0090 . 89 267 Tify Gene Family AT4G24470 60.2 1.1e-48 191.4
Lac4g3088 . 1 292 Tify Gene Family AT1G51600 60.0 2.2e-88 323.2
Lac12g0090 . 86 287 Tify Gene Family AT1G51600 57.5 5.8e-52 202.2
Lac6g0994 . 428 603 Tify Gene Family AT1G51600 59.0 8.3e-51 198.4
Lac6g0994 . 47 266 Tify Gene Family AT4G24470 59.1 4.3e-66 249.2
Lac12g0090 . 89 267 Tify Gene Family AT4G24470 60.2 1.1e-48 191.4
Lac4g3088 . 1 292 Tify Gene Family AT1G51600 60.0 2.2e-88 323.2
Lac12g0090 . 86 287 Tify Gene Family AT1G51600 57.5 5.8e-52 202.2
Lac6g0994 . 428 603 Tify Gene Family AT1G51600 59.0 8.3e-51 198.4
Lac4g3088 . 1 230 Tify Gene Family AT3G21175 57.4 5.4e-60 228.4
Lac12g2249 . 1 181 Tify Gene Family AT4G14713 53.1 4.1e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24027 PF06203 CCT 3.40E-13 CL0281 Lac TF