Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g0994 | ATGTACGGACGCGCTCAATCGCTGACCATGGGCGATCAGATCGCCTCCGGCCCCGACTGTGGCGACAGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGAAGCACACTCTCTCGAAGACGGTGCTGGAGTAGGCGGTATCATCGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCCGACATGGCTATTCAACGCGGCGATGGTTCAAGCCAGCTCACACTTTCGTTCCGTGGCCAAGTTTATCTTTTTGACGCCGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTGTCTTCTGGGCAGCAAAGTGTGGATTTGGTAAATCAGAATCAGAGGAATGCTGTGGATTTCCCCGGACGCAGTAGTCAGCCGCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGTAGTGTCTCAGAGTCAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCGACCCCAATGATGCGGCGAGGACCGTCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCCGGCCGAGCAGCTGAGCATTAGAAATTACGTTTGTTACAGAAAAAAGGCCACCATGGCTGTTTCTGGCTTCATTCAATCCGGCCCTCGTTTTGCCGTTGGATCTGATTATAAAAAAACAATCCTTCAGTGGGATTTCACACACTGCCGGCCCACAAGTCCATCGCCCTTGACACCCGTTGACGAATGTGAACCGTCAAATCATGTGGGTCCCATCGCACATCAGATTTCTTATTTAAACAAACGGCTGCAGATGAGGGCTCCACAGATGTCGTTTAGGGCTTTCGACAAATTGATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACACGTCCAAGTTCCTACAATGATTGGGGATGACGACGGTGAATATGAAGATGGTGGAGGTGGCGGCGGCGGCGGCGGCGGCGGCGACGTTATGGATGATGTCGAAGAGGCTCATATGACCTCGGTGAGCGTCGCGAACCATGGAGGTTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAAGGCGAGGTTTATGTGTTCCCGGCAGTTACTCCCGAAAAGGTACAAGCGGTGCTCTTACTTTTGGGAGGGCGTGATGTGCCAAGTGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTCGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCCGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACATTGAGAGATCTCAGCAAGGGAGGGAGAAGTGTGTCTCTGGATCATTTGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGTATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCGAGTAATCCTTCCGTTGACCCGGATGAGGAAGACATAAATGAAACTACTGGAGAACTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGACTAGAGGTCCTGTCCGCAGAGATGGCTGGGGAGATTACAAAAAGGTTTTCCTATTTCCAGCCATCCAAATCCATGCAAAGTGTCTTCATGTAGGTTCCAAAAGGCATTCTTCCCACAACATCGACCGTCGATAG | 2199 | 49.16 | MYGRAQSLTMGDQIASGPDCGDSGEPLDNRLVRYEAHSLEDGAGVGGIIEDLNPDAVYASAGDGSDMAIQRGDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSESGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQLSIRNYVCYRKKATMAVSGFIQSGPRFAVGSDYKKTILQWDFTHCRPTSPSPLTPVDECEPSNHVGPIAHQISYLNKRLQMRAPQMSFRAFDKLMAAANPQPLQARPFQEHVQVPTMIGDDDGEYEDGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPSGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSVSLDHLEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSVDPDEEDINETTGELTNSLPMRIVNHSTNGDEQTRGPVRRDGWGDYKKVFLFPAIQIHAKCLHVGSKRHSSHNIDRR | 732 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9064462 | 9080646 | - | Lag0004963.1 | Lac6g0994 | 610763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g0994 | 732 | MobiDBLite | consensus disorder prediction | 171 | 209 | - | - | |
Lac6g0994 | 732 | ProSiteProfiles | GATA-type zinc finger domain profile. | 200 | 259 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | ProSiteProfiles | Tify domain profile. | 71 | 106 | IPR010399 | - | |
Lac6g0994 | 732 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 556 | 606 | - | - | |
Lac6g0994 | 732 | ProSitePatterns | GATA-type zinc finger domain. | 561 | 588 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | Pfam | tify domain | 74 | 105 | IPR010399 | - | |
Lac6g0994 | 732 | Pfam | tify domain | 425 | 456 | IPR010399 | - | |
Lac6g0994 | 732 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 202 | 250 | - | - | |
Lac6g0994 | 732 | ProSiteProfiles | Tify domain profile. | 422 | 457 | IPR010399 | - | |
Lac6g0994 | 732 | ProSiteProfiles | GATA-type zinc finger domain profile. | 555 | 603 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | Gene3D | - | 197 | 256 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lac6g0994 | 732 | SMART | tify_2 | 71 | 106 | IPR010399 | - | |
Lac6g0994 | 732 | SMART | tify_2 | 422 | 457 | IPR010399 | - | |
Lac6g0994 | 732 | MobiDBLite | consensus disorder prediction | 126 | 142 | - | - | |
Lac6g0994 | 732 | Pfam | GATA zinc finger | 561 | 597 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | Pfam | GATA zinc finger | 206 | 242 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | MobiDBLite | consensus disorder prediction | 599 | 668 | - | - | |
Lac6g0994 | 732 | Gene3D | - | 557 | 607 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lac6g0994 | 732 | ProSiteProfiles | CCT domain profile. | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
Lac6g0994 | 732 | Pfam | CCT motif | 490 | 531 | IPR010402 | GO:0005515(InterPro) | |
Lac6g0994 | 732 | Pfam | CCT motif | 138 | 180 | IPR010402 | GO:0005515(InterPro) | |
Lac6g0994 | 732 | ProSitePatterns | GATA-type zinc finger domain. | 206 | 233 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | MobiDBLite | consensus disorder prediction | 126 | 146 | - | - | |
Lac6g0994 | 732 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 378 | 681 | IPR045280 | GO:0006355(InterPro) | |
Lac6g0994 | 732 | CDD | ZnF_GATA | 205 | 252 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | SMART | GATA_3 | 555 | 608 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | SMART | GATA_3 | 200 | 253 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lac6g0994 | 732 | CDD | ZnF_GATA | 560 | 608 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g0994 | 732 | ProSiteProfiles | CCT domain profile. | 490 | 532 | IPR010402 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0090 | Lac-Chr12:1045120 | Lac6g0994 | Lac-Chr6:9064462 | 1.50E-63 | dispersed | |
Lac4g3088 | Lac-Chr4:48998808 | Lac6g0994 | Lac-Chr6:9064462 | 3.90E-55 | dispersed | |
Lac6g0994 | Lac-Chr6:9064462 | Lac10g0096 | Lac-Chr10:742038 | 3.60E-07 | transposed | |
Lac6g0994 | Lac-Chr6:9064462 | Lac3g0598 | Lac-Chr3:4642751 | 3.60E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24027 | PF06203 | CCT | 3.40E-13 | CL0281 | Lac | TF |
Pathway information
