Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g0994 ATGTACGGACGCGCTCAATCGCTGACCATGGGCGATCAGATCGCCTCCGGCCCCGACTGTGGCGACAGCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGAAGCACACTCTCTCGAAGACGGTGCTGGAGTAGGCGGTATCATCGAGGATCTTAACCCTGATGCCGTTTATGCTTCCGCCGGTGATGGTTCCGACATGGCTATTCAACGCGGCGATGGTTCAAGCCAGCTCACACTTTCGTTCCGTGGCCAAGTTTATCTTTTTGACGCCGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGTTGCGAACTGTCTTCTGGGCAGCAAAGTGTGGATTTGGTAAATCAGAATCAGAGGAATGCTGTGGATTTCCCCGGACGCAGTAGTCAGCCGCAGAGGGCAGCCTCGTTAAATCGGTTTCGGCAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGGTAGTGTCTCAGAGTCAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCGACCCCAATGATGCGGCGAGGACCGTCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCCGGCCGAGCAGCTGAGCATTAGAAATTACGTTTGTTACAGAAAAAAGGCCACCATGGCTGTTTCTGGCTTCATTCAATCCGGCCCTCGTTTTGCCGTTGGATCTGATTATAAAAAAACAATCCTTCAGTGGGATTTCACACACTGCCGGCCCACAAGTCCATCGCCCTTGACACCCGTTGACGAATGTGAACCGTCAAATCATGTGGGTCCCATCGCACATCAGATTTCTTATTTAAACAAACGGCTGCAGATGAGGGCTCCACAGATGTCGTTTAGGGCTTTCGACAAATTGATGGCGGCTGCTAATCCTCAGCCTTTGCAAGCGCGTCCTTTCCAGGAACACGTCCAAGTTCCTACAATGATTGGGGATGACGACGGTGAATATGAAGATGGTGGAGGTGGCGGCGGCGGCGGCGGCGGCGGCGACGTTATGGATGATGTCGAAGAGGCTCATATGACCTCGGTGAGCGTCGCGAACCATGGAGGTTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAAGGCGAGGTTTATGTGTTCCCGGCAGTTACTCCCGAAAAGGTACAAGCGGTGCTCTTACTTTTGGGAGGGCGTGATGTGCCAAGTGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTCGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAGTTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCCGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGAACTTTATGCAATGCATGTGGTTTGATGTGGGCAAACAAGGGCACATTGAGAGATCTCAGCAAGGGAGGGAGAAGTGTGTCTCTGGATCATTTGGAACCTGAAACCCCAATGGATGTCAAACCCACAATCATGGAGGGAGAATTTTCGGGTATCCAGGATGAACATGGAACTCCTGAGGATCCTGGTAAAACTATGACCGAAGGCTCGAGTAATCCTTCCGTTGACCCGGATGAGGAAGACATAAATGAAACTACTGGAGAACTTACAAATTCGTTGCCCATGCGAATTGTCAATCATTCAACAAATGGTGATGAGCAGACTAGAGGTCCTGTCCGCAGAGATGGCTGGGGAGATTACAAAAAGGTTTTCCTATTTCCAGCCATCCAAATCCATGCAAAGTGTCTTCATGTAGGTTCCAAAAGGCATTCTTCCCACAACATCGACCGTCGATAG 2199 49.16 MYGRAQSLTMGDQIASGPDCGDSGEPLDNRLVRYEAHSLEDGAGVGGIIEDLNPDAVYASAGDGSDMAIQRGDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSESGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTPAEQLSIRNYVCYRKKATMAVSGFIQSGPRFAVGSDYKKTILQWDFTHCRPTSPSPLTPVDECEPSNHVGPIAHQISYLNKRLQMRAPQMSFRAFDKLMAAANPQPLQARPFQEHVQVPTMIGDDDGEYEDGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPSGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSVSLDHLEPETPMDVKPTIMEGEFSGIQDEHGTPEDPGKTMTEGSSNPSVDPDEEDINETTGELTNSLPMRIVNHSTNGDEQTRGPVRRDGWGDYKKVFLFPAIQIHAKCLHVGSKRHSSHNIDRR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9064462 9080646 - Lag0004963.1 Lac6g0994 610763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g0994 732 MobiDBLite consensus disorder prediction 171 209 - -
Lac6g0994 732 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Lac6g0994 732 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 556 606 - -
Lac6g0994 732 ProSitePatterns GATA-type zinc finger domain. 561 588 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 Pfam tify domain 74 105 IPR010399 -
Lac6g0994 732 Pfam tify domain 425 456 IPR010399 -
Lac6g0994 732 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 250 - -
Lac6g0994 732 ProSiteProfiles Tify domain profile. 422 457 IPR010399 -
Lac6g0994 732 ProSiteProfiles GATA-type zinc finger domain profile. 555 603 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 Gene3D - 197 256 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac6g0994 732 SMART tify_2 71 106 IPR010399 -
Lac6g0994 732 SMART tify_2 422 457 IPR010399 -
Lac6g0994 732 MobiDBLite consensus disorder prediction 126 142 - -
Lac6g0994 732 Pfam GATA zinc finger 561 597 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 MobiDBLite consensus disorder prediction 599 668 - -
Lac6g0994 732 Gene3D - 557 607 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac6g0994 732 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515(InterPro)
Lac6g0994 732 Pfam CCT motif 490 531 IPR010402 GO:0005515(InterPro)
Lac6g0994 732 Pfam CCT motif 138 180 IPR010402 GO:0005515(InterPro)
Lac6g0994 732 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 MobiDBLite consensus disorder prediction 126 146 - -
Lac6g0994 732 PANTHER GATA TRANSCRIPTION FACTOR 28 378 681 IPR045280 GO:0006355(InterPro)
Lac6g0994 732 CDD ZnF_GATA 205 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 SMART GATA_3 555 608 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 SMART GATA_3 200 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 MobiDBLite consensus disorder prediction 1 22 - -
Lac6g0994 732 CDD ZnF_GATA 560 608 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g0994 732 ProSiteProfiles CCT domain profile. 490 532 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0090 Lac-Chr12:1045120 Lac6g0994 Lac-Chr6:9064462 1.50E-63 dispersed
Lac4g3088 Lac-Chr4:48998808 Lac6g0994 Lac-Chr6:9064462 3.90E-55 dispersed
Lac6g0994 Lac-Chr6:9064462 Lac10g0096 Lac-Chr10:742038 3.60E-07 transposed
Lac6g0994 Lac-Chr6:9064462 Lac3g0598 Lac-Chr3:4642751 3.60E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24027 PF06203 CCT 3.40E-13 CL0281 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g0994 - - - 0.0