Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1003 ATGGCTCATCCTGGTTCTACCCAACTTTCTCATAAACTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAATACCCGTCTACATCTTGTTACTATCATTCCTACATCTCACGGTCTGAGGCATGATCCTGGAAGTCTTCAACTCTTACGCAGTGCAAGTCGCCCAATGTATCCCGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTTTGGAATCAGGTGGCGGAGCTGGGACTGATGTTCTAAAATCTGCAGCTGTGGTCTTGACAAGATCTTTTGACGCTTTGCGTGGCACTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGCGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTACGTTCAGCCTTTACTGTTATGGACCGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCCGTCAAACAACGACTTCTGAATTTTGTTCGATCTTTGTCTACTGTTCTGGCATTTGCCTATTGTTTATCAAGCTTGATTCAACAAGTACAAAAATTTGCTAATGAATCAAATGACTCAAGTGATACAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCCATTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTCACGGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGCGAGATATTTACTAACTTTCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTCTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATTATCCGAGGCGATGATCGTGAAGCGGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAAACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGCAAGGTTTTATCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGATAATGTCGATCCCGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACTTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCCACTCCTATTCGCACAGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTTCCGGGGCTACTAACCGTCCTCTGCTTCTTATCGAGCCATCCTATAAAGTCAATGGTGACGAAAAAGCCAAAGTCTCTAGTCGTCCCACTCGCTCATCAAATGAAGAAAAGGATGCCAAACAAGAGGCAGTCTCAACGTCAGGGACAAAAGCCCCCGACACGGCTGGATCAACATCAAATCTCGATACGAAAACAGATGATAAAAAGTCAGCTTCTCCATCTGGTACAGCATCCAAGCCTTCAACAGGGTCAGTATCCAACAACACCCAGACCCAGAATCTATCAACCAGTACTCCAGAACAAAGCAGCATTGAAAAACCAGTAACAAGCAATGAAGTAAAAGGAGAAAAGAAAGATCTCATAGGCCTGAATTCCAAGGATAATACGTCAAGAGGGACTCCGCCCAAAAGATCACCATCAGCTTCCAGTCCCGGCAGCGAGAAAACCGATATTTCTTCCTCAAGCTTGCAGAATAAGCAAGACGGCGAGAAGCCCTCTGCATCACCATCAGTGGCCAGACCACCATTGGAGGAGAATATTGTGCTGGGAGTTGCCTTAGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATCCATCTCCCTTTCACTCTTCTGCTGATTCTAAAGAAATTTCCACACAGAGGAATGGGAATGAGTTTCCTCCCAATAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 2166 43.81 MAHPGSTQLSHKLGIQSVHGCNKLHISGKGNTRLHLVTIIPTSHGLRHDPGSLQLLRSASRPMYPVSSRANVFVCRSVLESGGGAGTDVLKSAAVVLTRSFDALRGTPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFANESNDSSDTRNMGFDFAGKAIYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVDPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSGATNRPLLLIEPSYKVNGDEKAKVSSRPTRSSNEEKDAKQEAVSTSGTKAPDTAGSTSNLDTKTDDKKSASPSGTASKPSTGSVSNNTQTQNLSTSTPEQSSIEKPVTSNEVKGEKKDLIGLNSKDNTSRGTPPKRSPSASSPGSEKTDISSSSLQNKQDGEKPSASPSVARPPLEENIVLGVALEGSKRTLPIDEDLDPSPFHSSADSKEISTQRNGNEFPPNSKDMKDGQMPAVPGATKND 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9176436 9182730 + Lag0004972.1 Lac6g1003 610772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1003 721 Gene3D - 298 353 IPR023408 -
Lac6g1003 721 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g1003 721 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Lac6g1003 721 MobiDBLite consensus disorder prediction 547 586 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 602 642 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 587 601 - -
Lac6g1003 721 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 708 IPR045042 -
Lac6g1003 721 MobiDBLite consensus disorder prediction 496 520 - -
Lac6g1003 721 Gene3D - 192 296 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 521 538 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 668 682 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 496 721 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 684 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1819 Lac-Chr5:36181718 Lac6g1003 Lac-Chr6:9176436 3.20E-194 dispersed
Lac6g1003 Lac-Chr6:9176436 Lac1g0891 Lac-Chr1:23329130 2.40E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1003 K22047 - csv:101213477 1260.36