Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1003 ATGGCTCATCCTGGTTCTACCCAACTTTCTCATAAACTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTGGCAAGGGAAATACCCGTCTACATCTTGTTACTATCATTCCTACATCTCACGGTCTGAGGCATGATCCTGGAAGTCTTCAACTCTTACGCAGTGCAAGTCGCCCAATGTATCCCGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTTTGGAATCAGGTGGCGGAGCTGGGACTGATGTTCTAAAATCTGCAGCTGTGGTCTTGACAAGATCTTTTGACGCTTTGCGTGGCACTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGCGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTACGTTCAGCCTTTACTGTTATGGACCGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCCGTCAAACAACGACTTCTGAATTTTGTTCGATCTTTGTCTACTGTTCTGGCATTTGCCTATTGTTTATCAAGCTTGATTCAACAAGTACAAAAATTTGCTAATGAATCAAATGACTCAAGTGATACAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCCATTTACACTGCAGTCTGGATTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTCACGGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGCGAGATATTTACTAACTTTCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTGGTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTCTCTGGAACGGTTGAGCACGTTGGTTGGTGGTCGCCAACCATTATCCGAGGCGATGATCGTGAAGCGGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGGAATCTTACCCAGAAAACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGCAAGGTTTTATCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGTAGAATTTTTTTGGATAATGTCGATCCCGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACTTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCATAGGGCCCGGCTTGCCACTCCTATTCGCACAGTTCAGAAAATATATGGTGAGGCTGACTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTTCCGGGGCTACTAACCGTCCTCTGCTTCTTATCGAGCCATCCTATAAAGTCAATGGTGACGAAAAAGCCAAAGTCTCTAGTCGTCCCACTCGCTCATCAAATGAAGAAAAGGATGCCAAACAAGAGGCAGTCTCAACGTCAGGGACAAAAGCCCCCGACACGGCTGGATCAACATCAAATCTCGATACGAAAACAGATGATAAAAAGTCAGCTTCTCCATCTGGTACAGCATCCAAGCCTTCAACAGGGTCAGTATCCAACAACACCCAGACCCAGAATCTATCAACCAGTACTCCAGAACAAAGCAGCATTGAAAAACCAGTAACAAGCAATGAAGTAAAAGGAGAAAAGAAAGATCTCATAGGCCTGAATTCCAAGGATAATACGTCAAGAGGGACTCCGCCCAAAAGATCACCATCAGCTTCCAGTCCCGGCAGCGAGAAAACCGATATTTCTTCCTCAAGCTTGCAGAATAAGCAAGACGGCGAGAAGCCCTCTGCATCACCATCAGTGGCCAGACCACCATTGGAGGAGAATATTGTGCTGGGAGTTGCCTTAGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATCCATCTCCCTTTCACTCTTCTGCTGATTCTAAAGAAATTTCCACACAGAGGAATGGGAATGAGTTTCCTCCCAATAGCAAGGATATGAAAGATGGGCAGATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 2166 43.81 MAHPGSTQLSHKLGIQSVHGCNKLHISGKGNTRLHLVTIIPTSHGLRHDPGSLQLLRSASRPMYPVSSRANVFVCRSVLESGGGAGTDVLKSAAVVLTRSFDALRGTPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFANESNDSSDTRNMGFDFAGKAIYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVDPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSRSGATNRPLLLIEPSYKVNGDEKAKVSSRPTRSSNEEKDAKQEAVSTSGTKAPDTAGSTSNLDTKTDDKKSASPSGTASKPSTGSVSNNTQTQNLSTSTPEQSSIEKPVTSNEVKGEKKDLIGLNSKDNTSRGTPPKRSPSASSPGSEKTDISSSSLQNKQDGEKPSASPSVARPPLEENIVLGVALEGSKRTLPIDEDLDPSPFHSSADSKEISTQRNGNEFPPNSKDMKDGQMPAVPGATKND 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9176436 9182730 + Lag0004972.1 Lac6g1003 610772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1003 721 Gene3D - 298 353 IPR023408 -
Lac6g1003 721 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g1003 721 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Lac6g1003 721 MobiDBLite consensus disorder prediction 547 586 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 602 642 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 587 601 - -
Lac6g1003 721 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 708 IPR045042 -
Lac6g1003 721 MobiDBLite consensus disorder prediction 496 520 - -
Lac6g1003 721 Gene3D - 192 296 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 521 538 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 668 682 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 496 721 - -
Lac6g1003 721 MobiDBLite consensus disorder prediction 684 700 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1003 K22047 - - csv:101213477 1260.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1819 Lac-Chr5:36181718 Lac6g1003 Lac-Chr6:9176436 3.20E-194 dispersed
Lac6g1003 Lac-Chr6:9176436 Lac1g0891 Lac-Chr1:23329130 2.40E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0215 . 153 543 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.6e-152 537.0
Lac7g0217 . 16 269 Mechanosensitive Ion Channel Family AT4G00290 63.0 2.8e-88 323.6
Lac5g1819 . 66 716 Mechanosensitive Ion Channel Family AT5G10490 59.8 1.7e-197 686.8
Lac6g1003 . 9 710 Mechanosensitive Ion Channel Family AT5G10490 53.9 2.2e-189 659.8
Lac6g1003 . 9 501 Mechanosensitive Ion Channel Family AT1G58200 68.4 6.8e-194 674.9
Lac5g1819 . 32 684 Mechanosensitive Ion Channel Family AT1G58200 52.5 1.0e-173 607.8
Lac9g1858 . 47 935 Mechanosensitive Ion Channel Family AT1G53470 56.0 3.5e-267 918.7
Lac9g1858 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 54.0 4.4e-251 865.1
Lac9g1858 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.5 4.7e-293 1004.6
Lac4g1220 . 62 923 Mechanosensitive Ion Channel Family AT1G78610 53.7 1.0e-242 837.4
Lac2g0114 . 88 629 Mechanosensitive Ion Channel Family AT1G78610 51.1 2.2e-149 527.3
Lac9g1858 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.5 1.1e-238 823.9
Lac4g1220 . 272 926 Mechanosensitive Ion Channel Family AT2G17000 55.8 2.2e-202 703.4
Lac9g1858 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 51.0 1.8e-162 570.5
Lac2g0488 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 52.6 7.2e-181 631.7
Lac3g1066 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.8 1.4e-200 697.2
Lac2g0488 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 55.9 2.1e-196 683.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71