Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g1014 | ATGAAAGGCGATTTCGCTCACCCCAAGAGCAAGACTTCCAATATGTTATCTAAATTCCATCTCGCCCACCCGTTTACCCACCCTCCGCCGCACCAACCCGACGACGATTCCACCGCCACCGCCACCGCCGTTCCTCCGCCCTTTAAACATCTCTCCGACCACAACTCCGCCGCGGATGGCTCCACGATTGAGGTGGTCCGGCGGCCGAGGGGTCGCCCACCGGGGTCCAAGAACAAACCGAAACCGCCTCTTGTCATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCCGGTGGAAACGACGTCGTTGAAGCTATTTCGCGGTTCTGTCGTCGGAAAAATATGGGACTTTGTGTTCTCAACGGCTCTGGGACGGTTGCGAACGTTTCTCTCCGGCAACCCTCTTCCACTCCCGGCGCCACCGTCACGTTCCACGGCCGGTTCGAGATCCTCTCCATTTCGGCCACTGTGTTTCCTCAGACGACGCCGTTTCCTCTCCCCAACGGCTTCACCATCTCTCTCGCTGGACCTCAGGGCCAAATCGTCGGCGGCTTGGTCGCCGGCGCCTTGATCGCCGCCGGTACTGTTTTCGTCGTCGCCTCGTCGTTCAACAATCCCTTGTTCCACCGGCTCCCCGATGAGGAAGAGATTAATAATTTGGCCTCCGGCGGTAGCGGCGGCGGCGAGGTTCATTCCCCACATGTCTCCGGCGGCGGAGATAGTAGCGGGCACGGGCACGGGCACGGTCAGAGTCACGGGCAGCAGATTGTGGAATCGTGTGGAATGGCTATGTACAGTTGCCATGCGCCGTCCGATGTAATATGGGCGCCGACGGCAAGGCAGCCGCCGCCGTACTAA | 873 | 60.25 | MKGDFAHPKSKTSNMLSKFHLAHPFTHPPPHQPDDDSTATATAVPPPFKHLSDHNSAADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSSTPGATVTFHGRFEILSISATVFPQTTPFPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLFHRLPDEEEINNLASGGSGGGEVHSPHVSGGGDSSGHGHGHGQSHGQQIVESCGMAMYSCHAPSDVIWAPTARQPPPY | 290 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9263173 | 9264045 | + | Lag0004983.1 | Lac6g1014 | 610783 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g1014 | 290 | Gene3D | - | 94 | 227 | - | - | |
| Lac6g1014 | 290 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 93 | 220 | - | - | |
| Lac6g1014 | 290 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 53 | 261 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Lac6g1014 | 290 | CDD | DUF296 | 95 | 208 | IPR005175 | - | |
| Lac6g1014 | 290 | ProSiteProfiles | PPC domain profile profile. | 91 | 229 | IPR005175 | - | |
| Lac6g1014 | 290 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
| Lac6g1014 | 290 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 95 | 209 | IPR005175 | - | |
| Lac6g1014 | 290 | PIRSF | ESCAROLA | 7 | 290 | IPR014476 | GO:0003680(InterPro) | |
| Lac6g1014 | 290 | MobiDBLite | consensus disorder prediction | 223 | 259 | - | - | |
| Lac6g1014 | 290 | FunFam | AT-hook motif nuclear-localized protein | 95 | 227 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g1014 | Lac-Chr6:9263173 | Lac7g0316 | Lac-Chr7:2435494 | 1.00E-45 | dispersed | |
| Lac1g2235 | Lac-Chr1:43754030 | Lac6g1014 | Lac-Chr6:9263173 | 2.70E-08 | transposed | |
| Lac3g1447 | Lac-Chr3:13128487 | Lac6g1014 | Lac-Chr6:9263173 | 1.60E-37 | transposed | |
| Lac2g0777 | Lac-Chr2:6018791 | Lac6g1014 | Lac-Chr6:9263173 | 5.10E-82 | wgd |
Pathway information