Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1029 ATGGCCGTCGCCGTGCCGGATAATCTCTCTCGTGAGCAATATGTGTACCTTGCGAAGCTTGCCGAGCAGGCTGAAAGATACGAGGAGATGGTTCAGTTCATGCAGAAACTTGTTCTTGGTTCAACCCCAGGCTCCGAGCTCTCTGTCGAGGAACGAAATCTTCTCTCTGTCGCTTACAAGAACGTGATTGGCTCACTTCGAGCCGCTTGGCGGATTGTCTCTTCCATCGAGCAGAAGGAGGAGAGCCGTAAGAATGAAGAGCATGTTGTTCTTGTTAAGGATTATAGATCAAAGGTTGAGTCTGAGCTTTCCGAAGTCTGTGCGAGTATTTTGCAGCTTTTGGACTCGAATCTCATTCCCTCAGCCTCTGCTAGTGAGTCTAAGGTCTTCTACTTGAAGATGAAGGGGGATTACCATAGGTATTTGGCGGAGTTTAAGGTTGGGGATGAGAGGAAAGCTGCTGCTGAGGATACTATGCTGGCTTATAGGGCTGCTCAGGATGTTGCTGCTGCGGATCTTGCACCCACTCATCCGATAAGGCTGGGCCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCCGATAAAGCATGTAGCATGGCCAAGGAGGCATTTGAGGAAGCCATTGCTGAGCTGGACACCTTGGGTGAAGAATCATACAAGGACAGTACCCTCATCATGCAACTGTTGAGGGACAACCTCACTCTCTGGACTTCAGATGCGCAGGACCAGTTAGATGAGTCATAG 759 49.14 MAVAVPDNLSREQYVYLAKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVESELSEVCASILQLLDSNLIPSASASESKVFYLKMKGDYHRYLAEFKVGDERKAAAEDTMLAYRAAQDVAAADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9402343 9404664 + Lag0004998.1 Lac6g1029 610798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1029 252 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Lac6g1029 252 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Lac6g1029 252 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Lac6g1029 252 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Lac6g1029 252 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
Lac6g1029 252 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Lac6g1029 252 PIRSF 14-3-3 7 252 IPR000308 -
Lac6g1029 252 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Lac6g1029 252 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
Lac6g1029 252 PANTHER 14-3-3 PROTEIN 11 247 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Lac6g1029 252 FunFam 14-3-3 protein epsilon 8 252 - -
Lac6g1029 252 Gene3D - 2 252 IPR036815 -
Lac6g1029 252 SMART 1433_4 11 251 IPR023410 -
Lac6g1029 252 SUPERFAMILY 14-3-3 protein 10 244 IPR036815 -
Lac6g1029 252 Coils Coil 17 37 - -
Lac6g1029 252 Pfam 14-3-3 protein 17 242 IPR023410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1029 K06630 - - csv:101222827 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g0500 Lac-Chr4:11554483 Lac6g1029 Lac-Chr6:9402343 1.40E-99 dispersed
Lac6g1029 Lac-Chr6:9402343 Lac6g0913 Lac-Chr6:8083447 5.20E-99 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0913 . 4 242 14-3-3 family AT4G09000 90.4 1.7e-118 423.3
Lac2g0741 . 5 242 14-3-3 family AT4G09000 90.3 3.7e-118 422.2
Lac4g0500 . 6 241 14-3-3 family AT4G09000 86.4 5.2e-112 401.7
Lac6g1029 . 10 246 14-3-3 family AT4G09000 74.3 9.6e-98 354.4
Lac12g0775 . 4 238 14-3-3 family AT4G09000 71.7 3.5e-92 335.9
Lac13g0369 . 4 239 14-3-3 family AT4G09000 72.3 1.7e-91 333.6
Lac6g0892 . 213 450 14-3-3 family AT4G09000 69.2 1.9e-90 330.1
Lac2g0726 . 5 236 14-3-3 family AT4G09000 71.8 1.5e-87 320.5
Lac6g0798 . 8 207 14-3-3 family AT4G09000 62.0 1.3e-70 264.2
Lac6g0913 . 6 261 14-3-3 family AT1G78300 89.5 6.3e-124 441.0
Lac2g0741 . 5 258 14-3-3 family AT1G78300 89.4 5.4e-123 438.0
Lac4g0500 . 6 253 14-3-3 family AT1G78300 87.5 3.4e-117 418.7
Lac6g1029 . 11 247 14-3-3 family AT1G78300 75.5 1.9e-99 359.8
Lac13g0369 . 8 266 14-3-3 family AT1G78300 70.1 1.8e-94 343.2
Lac12g0775 . 7 255 14-3-3 family AT1G78300 69.7 2.6e-93 339.3
Lac6g0892 . 215 464 14-3-3 family AT1G78300 68.3 2.2e-92 336.3
Lac2g0726 . 1 248 14-3-3 family AT1G78300 69.2 5.1e-89 325.1
Lac6g0798 . 8 225 14-3-3 family AT1G78300 60.3 5.1e-73 271.9
Lac4g0500 . 6 259 14-3-3 family AT5G38480 90.2 3.1e-123 438.7
Lac6g0913 . 6 252 14-3-3 family AT5G38480 85.8 1.5e-114 409.8
Lac2g0741 . 6 252 14-3-3 family AT5G38480 85.0 7.6e-114 407.5
Lac6g1029 . 10 251 14-3-3 family AT5G38480 74.4 1.3e-97 353.6
Lac13g0369 . 8 258 14-3-3 family AT5G38480 73.1 1.3e-94 343.6
Lac6g0892 . 219 461 14-3-3 family AT5G38480 72.7 1.9e-93 339.7
Lac12g0775 . 7 247 14-3-3 family AT5G38480 72.0 2.2e-92 336.3
Lac2g0726 . 5 242 14-3-3 family AT5G38480 71.3 2.7e-87 319.3
Lac6g0798 . 8 223 14-3-3 family AT5G38480 61.6 1.4e-72 270.4
Lac6g0913 . 3 242 14-3-3 family AT1G35160 90.4 5.3e-119 424.9
Lac2g0741 . 4 242 14-3-3 family AT1G35160 89.5 5.9e-118 421.4
Lac4g0500 . 6 240 14-3-3 family AT1G35160 86.4 2.4e-111 399.4
Lac6g1029 . 1 246 14-3-3 family AT1G35160 73.2 4.0e-98 355.5
Lac12g0775 . 2 237 14-3-3 family AT1G35160 71.4 1.2e-91 334.0
Lac13g0369 . 8 239 14-3-3 family AT1G35160 73.1 2.8e-91 332.8
Lac6g0892 . 213 450 14-3-3 family AT1G35160 69.2 8.0e-91 331.3
Lac2g0726 . 5 236 14-3-3 family AT1G35160 72.2 6.4e-88 321.6
Lac6g0798 . 8 207 14-3-3 family AT1G35160 62.4 1.4e-71 267.3
Lac4g0500 . 5 254 14-3-3 family AT5G16050 86.0 1.3e-116 416.8
Lac6g0913 . 3 253 14-3-3 family AT5G16050 78.9 5.0e-108 388.3
Lac2g0741 . 4 251 14-3-3 family AT5G16050 78.3 1.2e-104 377.1
Lac6g1029 . 10 248 14-3-3 family AT5G16050 71.1 2.3e-92 336.3
Lac13g0369 . 3 246 14-3-3 family AT5G16050 65.4 4.6e-85 312.0
Lac6g0892 . 216 461 14-3-3 family AT5G16050 64.9 1.3e-84 310.5
Lac12g0775 . 1 246 14-3-3 family AT5G16050 65.1 8.6e-84 307.8
Lac2g0726 . 5 239 14-3-3 family AT5G16050 66.2 1.3e-79 293.9
Lac6g0798 . 3 214 14-3-3 family AT5G16050 56.5 8.1e-66 248.1
Lac6g1029 . 9 246 14-3-3 family AT5G10450 87.8 2.1e-114 409.5
Lac6g0913 . 3 251 14-3-3 family AT5G10450 77.2 6.9e-105 377.9
Lac2g0741 . 1 242 14-3-3 family AT5G10450 78.2 8.5e-103 370.9
Lac4g0500 . 7 259 14-3-3 family AT5G10450 73.6 1.4e-102 370.2
Lac12g0775 . 1 238 14-3-3 family AT5G10450 66.8 1.1e-86 317.4
Lac6g0892 . 219 450 14-3-3 family AT5G10450 67.7 7.2e-86 314.7
Lac13g0369 . 3 239 14-3-3 family AT5G10450 65.8 1.8e-84 310.1
Lac2g0726 . 5 236 14-3-3 family AT5G10450 67.2 4.4e-83 305.4
Lac6g0798 . 8 207 14-3-3 family AT5G10450 57.4 2.2e-66 250.0
Lac4g0500 . 4 260 14-3-3 family AT3G02520 91.1 1.3e-127 453.4
Lac6g0913 . 6 252 14-3-3 family AT3G02520 86.3 1.0e-116 417.2
Lac2g0741 . 5 258 14-3-3 family AT3G02520 83.2 1.9e-115 412.9
Lac6g1029 . 10 248 14-3-3 family AT3G02520 75.7 8.5e-100 360.9
Lac13g0369 . 8 263 14-3-3 family AT3G02520 69.0 3.5e-93 339.0
Lac6g0892 . 215 463 14-3-3 family AT3G02520 69.4 1.0e-92 337.4
Lac12g0775 . 4 238 14-3-3 family AT3G02520 71.7 1.2e-90 330.5
Lac2g0726 . 1 248 14-3-3 family AT3G02520 69.2 4.4e-88 322.0
Lac6g0798 . 8 225 14-3-3 family AT3G02520 59.7 4.0e-73 272.3
Lac6g1029 . 9 246 14-3-3 family AT5G65430 88.2 4.1e-115 411.8
Lac6g0913 . 8 242 14-3-3 family AT5G65430 80.1 3.6e-103 372.1
Lac4g0500 . 7 241 14-3-3 family AT5G65430 78.8 4.7e-103 371.7
Lac2g0741 . 1 242 14-3-3 family AT5G65430 78.2 1.8e-102 369.8
Lac12g0775 . 1 238 14-3-3 family AT5G65430 68.5 5.6e-88 321.6
Lac6g0892 . 219 450 14-3-3 family AT5G65430 69.8 2.8e-87 319.3
Lac13g0369 . 8 239 14-3-3 family AT5G65430 69.4 1.1e-86 317.4
Lac2g0726 . 5 236 14-3-3 family AT5G65430 68.9 2.2e-84 309.7
Lac6g0798 . 3 207 14-3-3 family AT5G65430 58.3 4.9e-68 255.4
Lac12g0775 . 1 264 14-3-3 family AT2G42590 80.5 2.1e-117 419.5
Lac6g0892 . 217 456 14-3-3 family AT2G42590 78.3 3.5e-104 375.6
Lac13g0369 . 6 257 14-3-3 family AT2G42590 75.1 1.7e-103 373.2
Lac2g0726 . 3 240 14-3-3 family AT2G42590 76.9 2.8e-101 365.9
Lac4g0500 . 8 248 14-3-3 family AT2G42590 73.0 1.2e-91 334.0
Lac2g0741 . 8 245 14-3-3 family AT2G42590 71.0 1.3e-90 330.5
Lac6g0913 . 8 248 14-3-3 family AT2G42590 70.1 3.7e-90 328.9
Lac6g0798 . 6 221 14-3-3 family AT2G42590 65.7 8.1e-85 311.2
Lac6g1029 . 11 248 14-3-3 family AT2G42590 64.7 3.2e-81 299.3
Lac6g0892 . 215 455 14-3-3 family AT1G22300 80.9 3.7e-105 378.6
Lac13g0369 . 5 244 14-3-3 family AT1G22300 77.5 2.3e-102 369.4
Lac12g0775 . 6 242 14-3-3 family AT1G22300 77.6 6.6e-102 367.9
Lac2g0726 . 1 240 14-3-3 family AT1G22300 77.1 2.6e-98 355.9
Lac4g0500 . 4 246 14-3-3 family AT1G22300 70.4 8.9e-91 330.9
Lac6g0913 . 8 246 14-3-3 family AT1G22300 69.5 9.2e-88 320.9
Lac2g0741 . 8 245 14-3-3 family AT1G22300 68.5 6.0e-87 318.2
Lac6g0798 . 5 212 14-3-3 family AT1G22300 65.8 5.8e-82 301.6
Lac6g1029 . 11 248 14-3-3 family AT1G22300 64.7 1.2e-79 293.9
Lac6g0892 . 215 459 14-3-3 family AT1G34760 80.0 3.8e-105 378.6
Lac13g0369 . 5 247 14-3-3 family AT1G34760 80.7 6.4e-105 377.9
Lac12g0775 . 11 246 14-3-3 family AT1G34760 80.5 1.6e-103 373.2
Lac2g0726 . 1 243 14-3-3 family AT1G34760 78.6 6.2e-100 361.3
Lac4g0500 . 4 250 14-3-3 family AT1G34760 70.4 6.4e-89 324.7
Lac6g0913 . 8 243 14-3-3 family AT1G34760 71.6 4.2e-88 322.0
Lac2g0741 . 8 249 14-3-3 family AT1G34760 69.4 9.3e-88 320.9
Lac6g0798 . 5 213 14-3-3 family AT1G34760 69.3 1.3e-84 310.5
Lac6g1029 . 11 247 14-3-3 family AT1G34760 64.1 1.8e-78 290.0
Lac13g0369 . 2 254 14-3-3 family AT1G26480 86.6 4.1e-118 421.8
Lac12g0775 . 3 242 14-3-3 family AT1G26480 79.6 1.0e-105 380.6
Lac6g0892 . 216 463 14-3-3 family AT1G26480 76.2 7.5e-104 374.4
Lac2g0726 . 3 244 14-3-3 family AT1G26480 76.4 3.9e-100 362.1
Lac6g0798 . 2 222 14-3-3 family AT1G26480 75.1 7.3e-99 357.8
Lac2g0741 . 8 247 14-3-3 family AT1G26480 73.8 1.7e-92 336.7
Lac6g0913 . 8 260 14-3-3 family AT1G26480 71.7 3.0e-92 335.9
Lac4g0500 . 5 256 14-3-3 family AT1G26480 72.0 5.6e-91 331.6
Lac6g1029 . 11 244 14-3-3 family AT1G26480 66.2 1.2e-80 297.4
Lac13g0369 . 5 237 14-3-3 family AT1G78220 52.6 1.4e-64 243.8
Lac6g0892 . 215 448 14-3-3 family AT1G78220 51.1 3.5e-63 239.2
Lac12g0775 . 6 236 14-3-3 family AT1G78220 50.4 3.8e-62 235.7
Lac2g0726 . 1 234 14-3-3 family AT1G78220 50.6 4.2e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003275 3 1 2 3 3 1 2 2 2 2 1 1 2 1 2 1 1 4 2 1 2 2 1 1 0 1 1 2 1 0 48