Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1034 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGAGAAGGTACTTTTGCAAAGGTAAAGTTCGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTTCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTCGTTCGTCTTCACGAGGTTCTTGCAAGCCGTACAAAGATTTATATAATCTTGGAGTACATTACTGGTGGTGAATTGTTCGACAAAATAGTTCATCATGGACGCCTTAGTGAAGCTGAATCTAGGAAATACTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATATCACAGAGATTTAAAGCCTGAAAATCTGCTACTCGACTCCCTTGGTAATTTGAAGATCTCAGACTTTGGCCTGAGTGCATTGCCCGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATAATGGTGCTTTGGCAGATGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGATGAGCTTGATCTCACCACGTTATACAGTAAGATTGAGAGAGCCGACTTTTCATGTCCATCTTGGTTCCCTGTGGGGGCAAAAGCCTTGATTCATAGAATATTTGACCCCAATCCTTCAACTCGTATTACCATTGAACAAATCAGAGAGGATGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTTTTCGAAGATGAAGATGTAAATCTGGATGATGTGAATGCTGTCTTTGATGATCCTGAGGAACACAGGACCGAAGAAGAACATGGTAACGAGGACATGAGCCCTTTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAATCTGGGAACAATGTTCGACCGTGGCCAGGATTCTATGAAGTACCCGACACGCTTCGTCTGCCAAAAGCCTGCAAAGGTTTTATTATCAACTATGGAAGTTGTAGCTCAATCAATGGGTTTCAAGACACACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCAGCAACCAAGACTTCTTATTTCTCAGTCATTATGGAAATTTTCGAAGTTGCTCCCACGTTCTTTATGGTTGACATTCAGAAAGCAGCTGGGGAAACCAGCGAGTACCTCAAGTTCTACAAGAACTTTTATGGCAATCTTGAAGACATCATCTGGAAACCTTCAATTGACACCAGCAAATCGAGGATCGCCAAGAACAAGAGTAAAAAACGTTGA 1341 42.51 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHHGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYNGALADVWSCGVILYVLMAGYLPFDELDLTTLYSKIERADFSCPSWFPVGAKALIHRIFDPNPSTRITIEQIREDEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEHRTEEEHGNEDMSPLALNAFDLIILSQGLNLGTMFDRGQDSMKYPTRFVCQKPAKVLLSTMEVVAQSMGFKTHIRNYKMRVEGPSATKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKNFYGNLEDIIWKPSIDTSKSRIAKNKSKKR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9430309 9436016 - Lag0005003.1 Lac6g1034 610803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1034 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
Lac6g1034 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g1034 446 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
Lac6g1034 446 CDD CIPK_C 309 418 - -
Lac6g1034 446 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Lac6g1034 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Lac6g1034 446 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Lac6g1034 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1034 446 FunFam Non-specific serine/threonine protein kinase 2 303 - -
Lac6g1034 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1034 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac6g1034 446 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1034 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
Lac6g1034 446 SUPERFAMILY Protein kinase-like (PK-like) 6 292 IPR011009 -
Lac6g1034 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1034 Lac-Chr6:9430309 Lac9g2932 Lac-Chr9:47112424 1.30E-145 dispersed
Lac3g0800 Lac-Chr3:6352637 Lac6g1034 Lac-Chr6:9430309 2.40E-169 transposed
Lac1g2804 Lac-Chr1:49160334 Lac6g1034 Lac-Chr6:9430309 7.00E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86260 PF00069 Pkinase 3.00E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1034 - - - 0.0