Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g1040 | ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTGATGGCTCTACGAAGAGAAGCAAATTGGGACGCCATTCCAACTGAAATCAGCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGAACAAAACACTGCCAATTTCCACCCAAATTCTTCATCGGAACCTATCTCCGCGCAGAATCTCGATGAGTTTTACCATCCTTTGGCAAACGAGTTCTCAGTTCCACAAATGGCCGATTCCGCCTACGCCGCCATGGAAATAGCCGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGTGGAGCGAGAAGGAGATGGAGAGGAAGAGGAATTAGGTTTTCTCGCGGATGAGATTCAGAACATGGAGGCGGTTCAAGCTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCTCCGTTTTCAACATCGGAACATGCTCTCTCGAGCGAAAGAACAGACCGAAGAAATTGCAGGGCCAACCGTCGAAGAATCTCATGGCTGAAAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTCCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCAATCGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGAGAAGTGGATCGATCGAATCAGACGACGAGGAACTCATTCAACGACACAAAACCGAGCGAATTCGTAGTGAGGAATTCACCAAAATTTGAGGTGGAAAGCAGAAACGGGAACACGAGGATCGAGATTTGCTGTGCGACAAAACCAGGATTGCTATTATCGACAGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCTGAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGATATGGAGGAAGCTGCTTGTAG | 1002 | 47.31 | MELDEHVFLEELMALRREANWDAIPTEISDLCSNAWAFDYCFEQNTANFHPNSSSEPISAQNLDEFYHPLANEFSVPQMADSAYAAMEIAAPLPFQAERPNVEREGDGEEEELGFLADEIQNMEAVQAQSACKMEPNQSPELSVFNIGTCSLERKNRPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDRSNQTTRNSFNDTKPSEFVVRNSPKFEVESRNGNTRIEICCATKPGLLLSTVNTIEALGLEIQQCVISCFNDFALQATCSEELKQRTELKPEELKEALFRNAGYGGSCL | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9489029 | 9490916 | + | Lag0005009.1 | Lac6g1040 | 610809 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g1040 | 333 | Coils | Coil | 202 | 229 | - | - | |
Lac6g1040 | 333 | Pfam | Plant bHLH transcription factor, ACT-like domain | 252 | 322 | IPR054502 | - | |
Lac6g1040 | 333 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 163 | 212 | IPR011598 | GO:0046983(InterPro) | |
Lac6g1040 | 333 | SMART | finulus | 169 | 218 | IPR011598 | GO:0046983(InterPro) | |
Lac6g1040 | 333 | CDD | ACT_UUR-ACR-like | 259 | 300 | - | - | |
Lac6g1040 | 333 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 129 | 328 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Lac6g1040 | 333 | Pfam | Helix-loop-helix DNA-binding domain | 170 | 212 | IPR011598 | GO:0046983(InterPro) | |
Lac6g1040 | 333 | Gene3D | - | 154 | 229 | IPR036638 | GO:0046983(InterPro) | |
Lac6g1040 | 333 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 167 | 228 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0808 | Lac-Chr2:6378004 | Lac6g1040 | Lac-Chr6:9489029 | 1.60E-90 | dispersed | |
Lac6g1040 | Lac-Chr6:9489029 | Lac6g2250 | Lac-Chr6:39503693 | 2.90E-12 | dispersed | |
Lac1g1687 | Lac-Chr1:38327089 | Lac6g1040 | Lac-Chr6:9489029 | 4.00E-55 | transposed | |
Lac5g1949 | Lac-Chr5:37810558 | Lac6g1040 | Lac-Chr6:9489029 | 3.00E-50 | transposed | |
Lac8g0052 | Lac-Chr8:843746 | Lac6g1040 | Lac-Chr6:9489029 | 1.10E-34 | transposed | |
Lac10g0613 | Lac-Chr10:4711912 | Lac6g1040 | Lac-Chr6:9489029 | 8.80E-35 | transposed | |
Lac1g2750 | Lac-Chr1:48689311 | Lac6g1040 | Lac-Chr6:9489029 | 3.90E-73 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24031 | PF00010 | HLH | 6.10E-10 | No_clan | Lac | TF |
Pathway information
