Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1040 ATGGAGCTCGACGAACACGTCTTCTTAGAGGAGTTGATGGCTCTACGAAGAGAAGCAAATTGGGACGCCATTCCAACTGAAATCAGCGATCTCTGCTCAAATGCTTGGGCATTCGATTACTGTTTCGAACAAAACACTGCCAATTTCCACCCAAATTCTTCATCGGAACCTATCTCCGCGCAGAATCTCGATGAGTTTTACCATCCTTTGGCAAACGAGTTCTCAGTTCCACAAATGGCCGATTCCGCCTACGCCGCCATGGAAATAGCCGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGTGGAGCGAGAAGGAGATGGAGAGGAAGAGGAATTAGGTTTTCTCGCGGATGAGATTCAGAACATGGAGGCGGTTCAAGCTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGAACTCTCCGTTTTCAACATCGGAACATGCTCTCTCGAGCGAAAGAACAGACCGAAGAAATTGCAGGGCCAACCGTCGAAGAATCTCATGGCTGAAAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCAATGCTCAGATCCATCGTCCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCAATCGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAAAGAGAAGTGGATCGATCGAATCAGACGACGAGGAACTCATTCAACGACACAAAACCGAGCGAATTCGTAGTGAGGAATTCACCAAAATTTGAGGTGGAAAGCAGAAACGGGAACACGAGGATCGAGATTTGCTGTGCGACAAAACCAGGATTGCTATTATCGACAGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACAGTGTGTAATTAGCTGCTTCAATGACTTCGCATTGCAAGCCACTTGTTCTGAGGAACTGAAGCAGAGAACAGAACTGAAGCCTGAAGAATTGAAGGAAGCTTTATTTAGGAATGCAGGATATGGAGGAAGCTGCTTGTAG 1002 47.31 MELDEHVFLEELMALRREANWDAIPTEISDLCSNAWAFDYCFEQNTANFHPNSSSEPISAQNLDEFYHPLANEFSVPQMADSAYAAMEIAAPLPFQAERPNVEREGDGEEEELGFLADEIQNMEAVQAQSACKMEPNQSPELSVFNIGTCSLERKNRPKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDRSNQTTRNSFNDTKPSEFVVRNSPKFEVESRNGNTRIEICCATKPGLLLSTVNTIEALGLEIQQCVISCFNDFALQATCSEELKQRTELKPEELKEALFRNAGYGGSCL 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9489029 9490916 + Lag0005009.1 Lac6g1040 610809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1040 333 Coils Coil 202 229 - -
Lac6g1040 333 Pfam Plant bHLH transcription factor, ACT-like domain 252 322 IPR054502 -
Lac6g1040 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983(InterPro)
Lac6g1040 333 SMART finulus 169 218 IPR011598 GO:0046983(InterPro)
Lac6g1040 333 CDD ACT_UUR-ACR-like 259 300 - -
Lac6g1040 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 328 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac6g1040 333 Pfam Helix-loop-helix DNA-binding domain 170 212 IPR011598 GO:0046983(InterPro)
Lac6g1040 333 Gene3D - 154 229 IPR036638 GO:0046983(InterPro)
Lac6g1040 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 228 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0808 Lac-Chr2:6378004 Lac6g1040 Lac-Chr6:9489029 1.60E-90 dispersed
Lac6g1040 Lac-Chr6:9489029 Lac6g2250 Lac-Chr6:39503693 2.90E-12 dispersed
Lac1g1687 Lac-Chr1:38327089 Lac6g1040 Lac-Chr6:9489029 4.00E-55 transposed
Lac5g1949 Lac-Chr5:37810558 Lac6g1040 Lac-Chr6:9489029 3.00E-50 transposed
Lac8g0052 Lac-Chr8:843746 Lac6g1040 Lac-Chr6:9489029 1.10E-34 transposed
Lac10g0613 Lac-Chr10:4711912 Lac6g1040 Lac-Chr6:9489029 8.80E-35 transposed
Lac1g2750 Lac-Chr1:48689311 Lac6g1040 Lac-Chr6:9489029 3.90E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24031 PF00010 HLH 6.10E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1040 - - - 0.0