Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1049 ATGGCTTTTCACTCAGCTTTCTTTCTTCTTTTGTTCCTCACTTCCTCCATCTCTTCTTCTCAAGCTTTTACTGCTACCAACCAGACTCAGTTCTTCTTTCTCATGCAAAAGACTGGCTCAGGAAAGTTCCTGTCTGATTGGGATCTTTCAGGAGGCAAATCCTTCTGCAACTTCACTGGAATCGAGTGCAATGACCGAGGTCACGTTGTTGGGATTGATATCTCTGGCCAGCCTCTCTCTGGTGGCTTCCCTGAAGATGTATGCTCTTACCTTCCAGAGCTGAGAGTTCTTCGTCTCGCTGGTACTGGTTTTCGGGGACATTTTCCTCTGGGAATCACCAACTGCTCTCTACTTGAAGAGCTTGACATGAGCTCTTTGTATCTCAATGGGACAATCCCAGATTTGTCGCAAATGAAACAACTGCGTGTACTTGACTTATCGTACAACTCCTTCACCGGTGACTTTCCCATGTCAGTTTTCAACCTTGTTAATCTTGAGGTGCTGAACTTCAATGAGAACTACAACCTCAACTTATGGAAGTTGCCTGTGAACATCTCCAGCCTGAAGAAGCTGAAATCTATGGTCTTGACAACCTGTATGTTAGACGGCGAAATCCCACGATCGATAGGGAACATGACGTCTCTTGTTGATCTTGAACTCAGTGGGAACTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTTCTGAAGAACTTGCAACAGCTTGAACTCTATTACAATGAACTCACAGGGAACATACCTGAGGAGCTTGGGAATCTAACAGAGCTCGTGGACGTGGACATGTCAGTGAACCTTTTGACAGGAGAGCTACCAGAATCTATTTGCAAACTCCCCAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTCACGGGAGAGATCCCAAGTGTACTAGCCAACTCAACAACACTCACCATGCTATCACTTTATGACAATTTTCTTACAGGACAAATTCCACAAAAGTTGGGGAAGTTCTCACCAATGGTTGTCCTTGACTTGTCGGAAAATCATCTGTCGGGACCATTGCCATCGGATATATGCAGAGGGGGTAAATTGCTGTACTTTCTCGTCCTGCAAAACAGGCTTTCTGGAGAAATACCGGCAAGTTTTGCTGAATGCGAGTCACTTTTAAGGTTCAGGATTAGTTCCAATCAGTTGGTGGGCACAATTCCTGAAGGAGTTTTGGCTCTCCCCCATGTTTCGATCATTGATGTTGCTCATAATAACCTCATTGGTTCCATTTCAAATTCAATCTCACAGGCAAGAAATTTGTCAGAATTGTTCTTGCAAAGAAACAGGATTTCTGGAGTTATCCCACCGGAGATTTCAGAAGCAACCAATCTGGTGAAGCTTGATCTTAGCTACAATCTTCTCTCCGGTCCAGTGCCGTCAGAGATTGGCAATCTGAAGAAGCTTAATCTGGTGATGTTACAAGGAAACCAACTGGATTCTTCAATCCCCAGCTCATTCATGTCGTTGAAATCCCTCAACGTTCTTGATCTCTCGAACAATCGTTTATCAGGGAAAATCCCAGAAAGTTTGAGTGAATTGTTCCCAAGTTCTTTGAATTTTTCGAACAATCAACTCTCGGGTCCAATTCCTCTGTCTTTGATCAAACAAGGGTTGGCCGATAGCTTCTCTGGCAACCCAAATCTATGTGTTCCACCGGCGTATTTCATTTCACCGGATCAGAAATTCCCCATTTGCTCACATTCTTCCTTCGTAAAACGTCTAAATTTCATCTGGGCAATCGGAATTCCATTGCTCATCTTCATCACTGGCGCCGTCCTGTTTCTAAAACGCCGAATTACAACCAGAAAGACATCAGAGATCGCAAACGAAGAAACCCTCTCTTCATCATTCTTCCATTTGCAGAACTTCGACCAAGACTCCATCCTCGAAGCCATGGTGGAAAAGAACATCGTCGGCCACGGCGGATCAGGAACGGTCTACAAAATCGAGCTCGGAAAAGGAGAAATCGTCGCCGTGAAGAGGCTATGGAACCGAAGAGCGAAACATCTCTTCGACAAGGAATTGAAAACAGAGGTCGAAACCCTAGGAACCATAAGGCACAAGAACATCGTGAAACTCTATAGCTACTTTTCAGGTCTAAAGTGCAGCCTTCTGGTTTACGAATACTTGCCAAACGGCAACCTATGGGACGCCCTTCATAAAGGGTGGATTCATCTCGATTGGCCCACGCGCCACCGCATCGCGGTGGGGATCGCGCAAGGCCTCGCCTATCTCCACCACGACCTCTCGCCGCCGGTAATCCACAGAGACATCAAAACCACAAACATTCTACTAGACGCAAATTACCAACCCAAAGTCGCAGATTTCGGCATAGCCAAAGTTCTACAAGGAAGCAAAGATTCAACCAACTCTGTAATCGCAGGAACCTACGGCTATTTGGCCCCCGAATACGCATACTCATCGAAGGCAACAACAAAGTGCGATGTGTACAGTTTCGGAGTGGTGTTAATGGAGCTGATTACAGGGAAGAAGCCGATCGAAGCCGAATATGGCGAGAATAAGAACATTGTGTTCTGGGTTTCGAACAAAGTGGACACAAAAGAAGGGGTTCTTGAGATTATTGACAAAAGATTAAAAGGGTTGTTCAGAGATGAGATAATTAAGGCTCTGAGGATCGCAATTCGTTGTACTTACAAGAATCCAGTGCTTCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTGCAAGAGGTGGATCCTTGCAAATTCGATCGACCCTTCGAAGATGTCAAAAAGGAAGAAGATACCGTATGA 2805 45.17 MAFHSAFFLLLFLTSSISSSQAFTATNQTQFFFLMQKTGSGKFLSDWDLSGGKSFCNFTGIECNDRGHVVGIDISGQPLSGGFPEDVCSYLPELRVLRLAGTGFRGHFPLGITNCSLLEELDMSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFNLVNLEVLNFNENYNLNLWKLPVNISSLKKLKSMVLTTCMLDGEIPRSIGNMTSLVDLELSGNFLKGEIPKEISFLKNLQQLELYYNELTGNIPEELGNLTELVDVDMSVNLLTGELPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVLDLSENHLSGPLPSDICRGGKLLYFLVLQNRLSGEIPASFAECESLLRFRISSNQLVGTIPEGVLALPHVSIIDVAHNNLIGSISNSISQARNLSELFLQRNRISGVIPPEISEATNLVKLDLSYNLLSGPVPSEIGNLKKLNLVMLQGNQLDSSIPSSFMSLKSLNVLDLSNNRLSGKIPESLSELFPSSLNFSNNQLSGPIPLSLIKQGLADSFSGNPNLCVPPAYFISPDQKFPICSHSSFVKRLNFIWAIGIPLLIFITGAVLFLKRRITTRKTSEIANEETLSSSFFHLQNFDQDSILEAMVEKNIVGHGGSGTVYKIELGKGEIVAVKRLWNRRAKHLFDKELKTEVETLGTIRHKNIVKLYSYFSGLKCSLLVYEYLPNGNLWDALHKGWIHLDWPTRHRIAVGIAQGLAYLHHDLSPPVIHRDIKTTNILLDANYQPKVADFGIAKVLQGSKDSTNSVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELITGKKPIEAEYGENKNIVFWVSNKVDTKEGVLEIIDKRLKGLFRDEIIKALRIAIRCTYKNPVLRPAMGEVVQLLQEVDPCKFDRPFEDVKKEEDTV 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9609861 9612744 + Lag0005018.1 Lac6g1049 610818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1049 934 Gene3D Ribonuclease Inhibitor 177 280 IPR032675 -
Lac6g1049 934 SUPERFAMILY L domain-like 253 572 - -
Lac6g1049 934 ProSiteProfiles Leucine-rich repeat profile. 502 524 IPR001611 GO:0005515(InterPro)
Lac6g1049 934 FunFam receptor protein-tyrosine kinase CEPR1 626 720 - -
Lac6g1049 934 Pfam Protein kinase domain 645 854 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1049 934 Gene3D Transferase(Phosphotransferase) domain 1 721 927 - -
Lac6g1049 934 SMART LRR_typ_2 236 260 IPR003591 -
Lac6g1049 934 SMART LRR_typ_2 500 524 IPR003591 -
Lac6g1049 934 SMART LRR_typ_2 162 188 IPR003591 -
Lac6g1049 934 SMART LRR_typ_2 476 499 IPR003591 -
Lac6g1049 934 SMART LRR_typ_2 284 308 IPR003591 -
Lac6g1049 934 SMART LRR_typ_2 429 452 IPR003591 -
Lac6g1049 934 PRINTS Leucine-rich repeat signature 455 468 - -
Lac6g1049 934 PRINTS Leucine-rich repeat signature 500 513 - -
Lac6g1049 934 Gene3D Ribonuclease Inhibitor 33 176 IPR032675 -
Lac6g1049 934 Gene3D Ribonuclease Inhibitor 287 570 IPR032675 -
Lac6g1049 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g1049 934 SMART serkin_6 643 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1049 934 Gene3D Phosphorylase Kinase; domain 1 615 720 - -
Lac6g1049 934 ProSitePatterns Protein kinases ATP-binding region signature. 649 671 IPR017441 GO:0005524(InterPro)
Lac6g1049 934 FunFam Receptor protein-tyrosine kinase CEPR1 284 570 - -
Lac6g1049 934 SUPERFAMILY Protein kinase-like (PK-like) 625 912 IPR011009 -
Lac6g1049 934 ProSiteProfiles Protein kinase domain profile. 643 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1049 934 PANTHER LEUCINE RICH REPEAT KINASE 2 181 914 IPR051420 -
Lac6g1049 934 Pfam Leucine Rich Repeat 502 524 IPR001611 GO:0005515(InterPro)
Lac6g1049 934 Pfam Leucine Rich Repeat 286 307 IPR001611 GO:0005515(InterPro)
Lac6g1049 934 Pfam Leucine Rich Repeat 238 260 IPR001611 GO:0005515(InterPro)
Lac6g1049 934 Pfam Leucine Rich Repeat 337 354 IPR001611 GO:0005515(InterPro)
Lac6g1049 934 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Lac6g1049 934 Pfam Leucine Rich Repeat 430 450 IPR001611 GO:0005515(InterPro)
Lac6g1049 934 Pfam Leucine Rich Repeat 454 476 IPR001611 GO:0005515(InterPro)
Lac6g1049 934 FunFam Leucine-rich repeat receptor-like protein kinase 178 280 - -
Lac6g1049 934 FunFam leucine-rich repeat receptor-like protein kinase TDR 721 922 - -
Lac6g1049 934 SUPERFAMILY RNI-like 69 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0816 Lac-Chr2:6461500 Lac6g1049 Lac-Chr6:9609861 2.80E-90 dispersed
Lac2g0817 Lac-Chr2:6478746 Lac6g1049 Lac-Chr6:9609861 2.10E-185 dispersed
Lac6g1049 Lac-Chr6:9609861 Lac8g2219 Lac-Chr8:40524688 2.90E-70 dispersed
Lac8g2246 Lac-Chr8:40746527 Lac6g1049 Lac-Chr6:9609861 7.50E-77 transposed
Lac1g2728 Lac-Chr1:48470441 Lac6g1049 Lac-Chr6:9609861 6.60E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86261 PF00069 Pkinase 2.40E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1049 - - - 0.0