Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1064 ATGTCCAGAATTTCACTGCCATTTCTAAGAATCCTGCTCTCTGTTTACCTCTTCTACTTCATCTCCATTCCATTCCATGTGAGTTCACAAACTGTCAATGCAGACCAGGCCATCTTGCTTGATCTTAAAGAGCAATGGGGGAATCCGCCATCTCTTCGGTTATGGAACTCCTCGTCCTCACCCTGTGATTGGCCTGAGATCGTTTGTAGAGACGGCACGGTCACCGGAATCTCTCTCAGAAACAAGAATATCACTGGAAAAATCCCAGTTGTCATCTGTAACCTGCAAAACCTCACTGAGCTTGATCTTTCATGGAACTACTTCCCTGGTGAGTTCCCAGATGTTCTATACAACTGTTCCAAGCTCAAGTATCTTGATCTTTCGGGAAACTATTTTGTGGGTCCAATACCTCAAGATATAGATCGGTTTCAAACTCTGCAGCACATGGATCTCAGTGCCAACAACTTCTCAGGCGATTTTCCAGCAGCACTAGGCCGGTTGCCAGATTTGAGAACTTTGAACATTTATCGAACTCAGTGCAATGGCACATTGCCAATTGAAATTGGCAACTTGTCCAATCTTGAAACTCTGAGCTTGGCGTACAACACTTTGCTGGTCCCATCGCCAATACCACAAGAGTTCAGGAAACTGAAGAAGTTGAAGTATATATGGATGACAAAATCCAACTTGATCGGTGAAATCCCAGAAAGCTTATCGGATCTTTTGAGCCTTCAGCACTTGGATTTATCCAGCAACAACTTGGTAGGCTCTATTCCTGCTGGGCTGTTCTCTTTGCAGAATTTAAGCAACTTATATCTCTACCAAAATCAATTGTCTGGTGAGATACCCAAATCAATCCGAGCATCAAACTTACTCAATGTTGACCTCTCTGCTAACAATTTAAGTGGCACAATCCCTGAAGATTTTGGGAAGTTGAAAAAGTTGCAGGTCCTCAACTTGTTTGCAAATCACTTGTCTGGTGAGATTCCGGGGAGTTTAGGCTTAATACCGACGCTGAAAGGTTTTCGTCTTTTCAACAACAGCTTAACCGGGGGCTTGCCACAAGAATTGGGTCTGCATTCAAATCTGGAAGCATTGGAGGTTTCAATGAATAAACTAAGTGGTTCGTTACCTGAACATCTCTGCAGAAATGGCGTCTTACAGGGAGTAGTTGCTTTCTCCAACAATCTTAGCGGCGAATTGCCAAAAGGGCTTGGCAATTGCAGGACCCTACGCACAATCCAGCTTTCTAACAACAACTTTTCCGGCGAAATACCTCCAGGTCTTTGGACTACTTTCAATCTCTCAAGCATAATGTTAGATGGAAATTCTTTCTCAGGCAAGTTACCAGATAGCTTATCTTGGAACCTCTCGAGACTGACTATAAATAACAACAAATTTTGGGGTCAAATTCCTCGAAATGTGTCAGCATGGCGAAACTTGGTTGTGTTTGAGGCAAGCAACAATCTGCTTTCTGGTAAATTTCCTGAGGAATTGACAAGCCTTGCTCGTCTTACCACACTCATACTGAGTGGAAATCAACTCTCCGGCCAACTTCCATCGACAATTGGTTCGTGGGAATCGTTGAATACTCTAAATCTCTCTAGAAATGAACTTTCAGGCCACATTCCAGCAGCGTTCGGCTCCCTTCCCAACCTCCTTTACCTTGATTTATCAGCTAATAACTTGTCAGGTGAAATCCCAGCTGAAATTGGCCATTTAAGACTGGCTTCCCTCAATTTGTCTTCCAATCAGCTTTCAGGGAAAATTCCAGACGAGTACGATAATATAGCCTATGAAAGGAGTTTCTTGAACAACCCCAAACTATGTACCACCACTGATTTACTGGACCTTCCAAGCTGTTACTCCAGACAAAGAGATTCAAGAGATCAGTCCTCTAAATATCTTCCCCTCATTCTAGCCCTCATTGTCACCTTGCTCATAATTGCTTTACTGTGGATCTTTATCCTATATAGAAGTTATTGCAAGAAGGATGAAAGATGCCACCTTGACACATGGAAGCTAACTTCATTCCAGAGATTGGACTTCACAGAAGCAAATATCTTGTCGAACTTGACAGAAACTAATCTGATTGGAAGTGGTGGATCCGGCAAAGTGTACTGCATAGATATCAACCATGATGGTTATTATGTTGCAGTCAAAAAGATTTGGAGTAACAAGAAGTTGGATCAAAAGCTTGAGAAGGAATTTCAAGCAGAAGTTCAAATACTAGGCTCGATTCGGCATTCAAATATAGTGAAGCTGCTATGCTGCGTCTGGAATGAGAATTCAAAGCTCTTAGTCTATGAATACATGCAAAATCAGAGCCTAGATAAATGGCTTCATAAAAAGAAGAAAAGGTTAGGAGCAGCTGTAATGGATTTTGTTGATCAATATGTCTTAGACTGGCCAAGGAGGTTGCAGATTGCTATTGGAGCTGCACAAGGCCTCAGTTATATGCACCATGATTGTTCTCCACCGATCATTCATCGAGATGTGAAGTCGAGCAACATCTTATTAGACCGCGAGTTCCAGGCAAGGATAGCAGACTTTGGGCTGGCCAAGATGCTGGCTAAGCAGGGAGAGCCCCACACCATGTCTGCAATAGCAGGATCTTTTGGCTATATAGCTCCTGAGTATGCCTATACAACGAAAGTCAATGAGAAAATTGACGTCTATAGCTTTGGGGTTGTACTCCTGGAGCTCACAACGGGAAGAGAACCTAACTGTGGAGATGAGCACACAAGCCTAGCAGAATGGGCATGGCAGCAATATAGTGAGGGAAAACCTATTATTGATGCTCTTGATGAGGAAATCAGAAACCCATGCAATTTGGAAGAGAAGACTACTCTATTCAAACTTGGTCTAATTTGTACGAGCACATTACCTGAAATACGGCCATCAATGAAGGAGGTTCTGCATATTCTACGCCAATGCAGCCCTCCAGAAGATTGTGATAGGAGAAAGAATGCCGGTGAATTTGATGCTGTTCCCCTCCTTGGCACTCCTCTATGA 3015 43.02 MSRISLPFLRILLSVYLFYFISIPFHVSSQTVNADQAILLDLKEQWGNPPSLRLWNSSSSPCDWPEIVCRDGTVTGISLRNKNITGKIPVVICNLQNLTELDLSWNYFPGEFPDVLYNCSKLKYLDLSGNYFVGPIPQDIDRFQTLQHMDLSANNFSGDFPAALGRLPDLRTLNIYRTQCNGTLPIEIGNLSNLETLSLAYNTLLVPSPIPQEFRKLKKLKYIWMTKSNLIGEIPESLSDLLSLQHLDLSSNNLVGSIPAGLFSLQNLSNLYLYQNQLSGEIPKSIRASNLLNVDLSANNLSGTIPEDFGKLKKLQVLNLFANHLSGEIPGSLGLIPTLKGFRLFNNSLTGGLPQELGLHSNLEALEVSMNKLSGSLPEHLCRNGVLQGVVAFSNNLSGELPKGLGNCRTLRTIQLSNNNFSGEIPPGLWTTFNLSSIMLDGNSFSGKLPDSLSWNLSRLTINNNKFWGQIPRNVSAWRNLVVFEASNNLLSGKFPEELTSLARLTTLILSGNQLSGQLPSTIGSWESLNTLNLSRNELSGHIPAAFGSLPNLLYLDLSANNLSGEIPAEIGHLRLASLNLSSNQLSGKIPDEYDNIAYERSFLNNPKLCTTTDLLDLPSCYSRQRDSRDQSSKYLPLILALIVTLLIIALLWIFILYRSYCKKDERCHLDTWKLTSFQRLDFTEANILSNLTETNLIGSGGSGKVYCIDINHDGYYVAVKKIWSNKKLDQKLEKEFQAEVQILGSIRHSNIVKLLCCVWNENSKLLVYEYMQNQSLDKWLHKKKKRLGAAVMDFVDQYVLDWPRRLQIAIGAAQGLSYMHHDCSPPIIHRDVKSSNILLDREFQARIADFGLAKMLAKQGEPHTMSAIAGSFGYIAPEYAYTTKVNEKIDVYSFGVVLLELTTGREPNCGDEHTSLAEWAWQQYSEGKPIIDALDEEIRNPCNLEEKTTLFKLGLICTSTLPEIRPSMKEVLHILRQCSPPEDCDRRKNAGEFDAVPLLGTPL 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9754287 9757624 - Lag0005033.1 Lac6g1064 610833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1064 1004 SMART LRR_typ_2 241 265 IPR003591 -
Lac6g1064 1004 SMART LRR_typ_2 550 574 IPR003591 -
Lac6g1064 1004 SMART LRR_typ_2 191 216 IPR003591 -
Lac6g1064 1004 SMART LRR_typ_2 95 119 IPR003591 -
Lac6g1064 1004 SMART LRR_typ_2 502 526 IPR003591 -
Lac6g1064 1004 SMART LRR_typ_2 312 335 IPR003591 -
Lac6g1064 1004 SUPERFAMILY RNI-like 289 595 - -
Lac6g1064 1004 SMART serkin_6 692 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1064 1004 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 187 285 - -
Lac6g1064 1004 Gene3D Ribonuclease Inhibitor 34 142 IPR032675 -
Lac6g1064 1004 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 ProSitePatterns Protein kinases ATP-binding region signature. 698 722 IPR017441 GO:0005524(InterPro)
Lac6g1064 1004 PRINTS Leucine-rich repeat signature 244 257 - -
Lac6g1064 1004 PRINTS Leucine-rich repeat signature 550 563 - -
Lac6g1064 1004 Pfam Leucine Rich Repeat 146 167 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine Rich Repeat 267 287 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine Rich Repeat 314 334 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine Rich Repeat 121 141 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine Rich Repeat 411 430 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine Rich Repeat 504 525 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 FunFam Kinase family with leucine-rich repeat domain-containing protein 772 993 - -
Lac6g1064 1004 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 22 979 IPR050647 -
Lac6g1064 1004 Gene3D Ribonuclease Inhibitor 143 210 IPR032675 -
Lac6g1064 1004 ProSiteProfiles Protein kinase domain profile. 692 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1064 1004 Gene3D Transferase(Phosphotransferase) domain 1 772 995 - -
Lac6g1064 1004 FunFam Leucine-rich receptor-like protein kinase family protein 382 623 - -
Lac6g1064 1004 SUPERFAMILY L domain-like 42 381 - -
Lac6g1064 1004 ProSiteProfiles Leucine-rich repeat profile. 243 266 IPR001611 GO:0005515(InterPro)
Lac6g1064 1004 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Lac6g1064 1004 SUPERFAMILY Protein kinase-like (PK-like) 686 976 IPR011009 -
Lac6g1064 1004 Gene3D Ribonuclease Inhibitor 336 622 IPR032675 -
Lac6g1064 1004 Gene3D Phosphorylase Kinase; domain 1 659 771 - -
Lac6g1064 1004 FunFam Receptor-like protein kinase HSL1 672 771 - -
Lac6g1064 1004 FunFam Receptor-like protein kinase HSL1 isoform A 32 182 - -
Lac6g1064 1004 Pfam Protein kinase domain 694 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1064 1004 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 286 381 - -
Lac6g1064 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g1064 1004 Gene3D Ribonuclease Inhibitor 211 335 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0961 Lac-Chr3:7803298 Lac6g1064 Lac-Chr6:9754287 5.50E-126 dispersed
Lac5g1862 Lac-Chr5:36897272 Lac6g1064 Lac-Chr6:9754287 1.80E-78 dispersed
Lac6g1064 Lac-Chr6:9754287 Lac8g2246 Lac-Chr8:40746527 7.70E-69 dispersed
Lac11g1602 Lac-Chr11:28044473 Lac6g1064 Lac-Chr6:9754287 7.00E-48 wgd
Lac12g0842 Lac-Chr12:8764084 Lac6g1064 Lac-Chr6:9754287 2.00E-48 wgd
Lac3g0960 Lac-Chr3:7793474 Lac6g1064 Lac-Chr6:9754287 8.00E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86262 PF00069 Pkinase 3.00E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1064 - - - 0.0