Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1069 ATGGAAGCTCCAGAATATTTCCAGAACAATGGCTACTGCTCCCAATTCGCCGCCGACAACGACGCCCCCGCCGCCGTCGGAGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACCACGACGCCGACGCCGGAGGATTGTTCAACAATGCCACCGCCTGCTTCCTCAATAATAATGGAATTAACTCCGCCTCCGCCGACTCCTCCGCCCTCACCGTCGTCGAGAGCTGCAATTCCTCCAATTCCTTCTCGGTTTCCGAACCCAATTCCTTTCTCGAAGACATTAGTGCCTCTAATTTAGCCGACGCCCATTTCTCCGACGAACTCTGCATTCCGTTAGATGATTTAGCTGAGTTGGAATGGCTTTCAAATTTCGTAGAGGAATCATTTTCCAGTGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGGACCCTCCCACTCCCGACAACCCACCACCGCCGCCGTCTCCACCACCACCCACGCCCGAAACGCCGCCGAAATCTTCAAACCCGACATTGTCTCAGTTCCGGCGAAGGCCCGCAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTCCCCCTCTCTCCGACCACCTCCTCGTCGGAATCCGAGATCGCCCCCGCCGGACCACCGCAGCCGGTCAAAAAAGTCCCGCCGAAGGTGGCGGCGACGGTGAAGAAGAAGGACTGCCCGGAGGCCGGAGCGTCCGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCAAAGACGCTGTGTAACGCCTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAATACCGCCCCGCCGCCAGCCCCACCTTCGTCCTCACCAAACACTCGAACTCCCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAGGAGCTTCTCAGAGCCCAACAACAGCAACAGCAACAAGTGCTTTTGGATCACCATCACCATCACCGTCATCAGGATATGATGTTTGATTCATCCAACGGTGACGACTATCTCATCCATCAACACGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1116 57.97 MEAPEYFQNNGYCSQFAADNDAPAAVGDHFIVEELLDFSNHDADAGGLFNNATACFLNNNGINSASADSSALTVVESCNSSNSFSVSEPNSFLEDISASNLADAHFSDELCIPLDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDGPSHSRQPTTAAVSTTTHARNAAEIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTSSSESEIAPAGPPQPVKKVPPKVAATVKKKDCPEAGASAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQQVLLDHHHHHRHQDMMFDSSNGDDYLIHQHVGPDFRQLI 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9819987 9822050 - Lag0005038.1 Lac6g1069 610838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1069 371 PANTHER GATA TRANSCRIPTION FACTOR 30 322 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lac6g1069 371 MobiDBLite consensus disorder prediction 187 232 - -
Lac6g1069 371 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g1069 371 MobiDBLite consensus disorder prediction 193 219 - -
Lac6g1069 371 FunFam GATA transcription factor 247 333 - -
Lac6g1069 371 Pfam GATA zinc finger 256 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g1069 371 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 252 314 - -
Lac6g1069 371 PIRSF Txn_fac_GATA_plant 14 347 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lac6g1069 371 SMART GATA_3 250 300 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g1069 371 Coils Coil 314 334 - -
Lac6g1069 371 CDD ZnF_GATA 255 302 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g1069 371 Gene3D - 248 334 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac6g1069 371 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0844 Lac-Chr2:6673479 Lac6g1069 Lac-Chr6:9819987 1.90E-88 dispersed
Lac4g2914 Lac-Chr4:47516069 Lac6g1069 Lac-Chr6:9819987 5.20E-62 dispersed
Lac5g2072 Lac-Chr5:39260596 Lac6g1069 Lac-Chr6:9819987 5.20E-35 dispersed
Lac6g1069 Lac-Chr6:9819987 Lac8g2411 Lac-Chr8:42217240 5.10E-34 dispersed
Lac11g0907 Lac-Chr11:9820578 Lac6g1069 Lac-Chr6:9819987 2.00E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24033 PF00320 GATA 1.90E-15 CL0167 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1069 - - - 0.0