Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g1069 | ATGGAAGCTCCAGAATATTTCCAGAACAATGGCTACTGCTCCCAATTCGCCGCCGACAACGACGCCCCCGCCGCCGTCGGAGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACCACGACGCCGACGCCGGAGGATTGTTCAACAATGCCACCGCCTGCTTCCTCAATAATAATGGAATTAACTCCGCCTCCGCCGACTCCTCCGCCCTCACCGTCGTCGAGAGCTGCAATTCCTCCAATTCCTTCTCGGTTTCCGAACCCAATTCCTTTCTCGAAGACATTAGTGCCTCTAATTTAGCCGACGCCCATTTCTCCGACGAACTCTGCATTCCGTTAGATGATTTAGCTGAGTTGGAATGGCTTTCAAATTTCGTAGAGGAATCATTTTCCAGTGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGGACCCTCCCACTCCCGACAACCCACCACCGCCGCCGTCTCCACCACCACCCACGCCCGAAACGCCGCCGAAATCTTCAAACCCGACATTGTCTCAGTTCCGGCGAAGGCCCGCAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTCCCCCTCTCTCCGACCACCTCCTCGTCGGAATCCGAGATCGCCCCCGCCGGACCACCGCAGCCGGTCAAAAAAGTCCCGCCGAAGGTGGCGGCGACGGTGAAGAAGAAGGACTGCCCGGAGGCCGGAGCGTCCGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCAAAGACGCTGTGTAACGCCTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAATACCGCCCCGCCGCCAGCCCCACCTTCGTCCTCACCAAACACTCGAACTCCCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAGGAGCTTCTCAGAGCCCAACAACAGCAACAGCAACAAGTGCTTTTGGATCACCATCACCATCACCGTCATCAGGATATGATGTTTGATTCATCCAACGGTGACGACTATCTCATCCATCAACACGTGGGCCCCGATTTCCGGCAGCTGATCTGA | 1116 | 57.97 | MEAPEYFQNNGYCSQFAADNDAPAAVGDHFIVEELLDFSNHDADAGGLFNNATACFLNNNGINSASADSSALTVVESCNSSNSFSVSEPNSFLEDISASNLADAHFSDELCIPLDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDGPSHSRQPTTAAVSTTTHARNAAEIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTSSSESEIAPAGPPQPVKKVPPKVAATVKKKDCPEAGASAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQQVLLDHHHHHRHQDMMFDSSNGDDYLIHQHVGPDFRQLI | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9819987 | 9822050 | - | Lag0005038.1 | Lac6g1069 | 610838 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g1069 | 371 | PANTHER | GATA TRANSCRIPTION FACTOR | 30 | 322 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Lac6g1069 | 371 | MobiDBLite | consensus disorder prediction | 187 | 232 | - | - | |
Lac6g1069 | 371 | ProSitePatterns | GATA-type zinc finger domain. | 256 | 281 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g1069 | 371 | MobiDBLite | consensus disorder prediction | 193 | 219 | - | - | |
Lac6g1069 | 371 | FunFam | GATA transcription factor | 247 | 333 | - | - | |
Lac6g1069 | 371 | Pfam | GATA zinc finger | 256 | 290 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g1069 | 371 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 252 | 314 | - | - | |
Lac6g1069 | 371 | PIRSF | Txn_fac_GATA_plant | 14 | 347 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Lac6g1069 | 371 | SMART | GATA_3 | 250 | 300 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g1069 | 371 | Coils | Coil | 314 | 334 | - | - | |
Lac6g1069 | 371 | CDD | ZnF_GATA | 255 | 302 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac6g1069 | 371 | Gene3D | - | 248 | 334 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lac6g1069 | 371 | ProSiteProfiles | GATA-type zinc finger domain profile. | 250 | 286 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0844 | Lac-Chr2:6673479 | Lac6g1069 | Lac-Chr6:9819987 | 1.90E-88 | dispersed | |
Lac4g2914 | Lac-Chr4:47516069 | Lac6g1069 | Lac-Chr6:9819987 | 5.20E-62 | dispersed | |
Lac5g2072 | Lac-Chr5:39260596 | Lac6g1069 | Lac-Chr6:9819987 | 5.20E-35 | dispersed | |
Lac6g1069 | Lac-Chr6:9819987 | Lac8g2411 | Lac-Chr8:42217240 | 5.10E-34 | dispersed | |
Lac11g0907 | Lac-Chr11:9820578 | Lac6g1069 | Lac-Chr6:9819987 | 2.00E-07 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24033 | PF00320 | GATA | 1.90E-15 | CL0167 | Lac | TF |
Pathway information
