Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1069 ATGGAAGCTCCAGAATATTTCCAGAACAATGGCTACTGCTCCCAATTCGCCGCCGACAACGACGCCCCCGCCGCCGTCGGAGACCATTTCATCGTCGAGGAGCTTCTCGATTTCTCCAACCACGACGCCGACGCCGGAGGATTGTTCAACAATGCCACCGCCTGCTTCCTCAATAATAATGGAATTAACTCCGCCTCCGCCGACTCCTCCGCCCTCACCGTCGTCGAGAGCTGCAATTCCTCCAATTCCTTCTCGGTTTCCGAACCCAATTCCTTTCTCGAAGACATTAGTGCCTCTAATTTAGCCGACGCCCATTTCTCCGACGAACTCTGCATTCCGTTAGATGATTTAGCTGAGTTGGAATGGCTTTCAAATTTCGTAGAGGAATCATTTTCCAGTGAGGACATGCAAAAGTTAGAACTCATCTCCGGAGTCAAAGTCAAATCCGACGGACCCTCCCACTCCCGACAACCCACCACCGCCGCCGTCTCCACCACCACCCACGCCCGAAACGCCGCCGAAATCTTCAAACCCGACATTGTCTCAGTTCCGGCGAAGGCCCGCAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTCCCCCTCTCTCCGACCACCTCCTCGTCGGAATCCGAGATCGCCCCCGCCGGACCACCGCAGCCGGTCAAAAAAGTCCCGCCGAAGGTGGCGGCGACGGTGAAGAAGAAGGACTGCCCGGAGGCCGGAGCGTCCGCCGGAGAGGGGCGGAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCAAAGACGCTGTGTAACGCCTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAATACCGCCCCGCCGCCAGCCCCACCTTCGTCCTCACCAAACACTCGAACTCCCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAGGAGCTTCTCAGAGCCCAACAACAGCAACAGCAACAAGTGCTTTTGGATCACCATCACCATCACCGTCATCAGGATATGATGTTTGATTCATCCAACGGTGACGACTATCTCATCCATCAACACGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1116 57.97 MEAPEYFQNNGYCSQFAADNDAPAAVGDHFIVEELLDFSNHDADAGGLFNNATACFLNNNGINSASADSSALTVVESCNSSNSFSVSEPNSFLEDISASNLADAHFSDELCIPLDDLAELEWLSNFVEESFSSEDMQKLELISGVKVKSDGPSHSRQPTTAAVSTTTHARNAAEIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTSSSESEIAPAGPPQPVKKVPPKVAATVKKKDCPEAGASAGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQQVLLDHHHHHRHQDMMFDSSNGDDYLIHQHVGPDFRQLI 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9819987 9822050 - Lag0005038.1 Lac6g1069 610838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1069 371 PANTHER GATA TRANSCRIPTION FACTOR 30 322 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lac6g1069 371 MobiDBLite consensus disorder prediction 187 232 - -
Lac6g1069 371 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g1069 371 MobiDBLite consensus disorder prediction 193 219 - -
Lac6g1069 371 FunFam GATA transcription factor 247 333 - -
Lac6g1069 371 Pfam GATA zinc finger 256 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g1069 371 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 252 314 - -
Lac6g1069 371 PIRSF Txn_fac_GATA_plant 14 347 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lac6g1069 371 SMART GATA_3 250 300 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g1069 371 Coils Coil 314 334 - -
Lac6g1069 371 CDD ZnF_GATA 255 302 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac6g1069 371 Gene3D - 248 334 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac6g1069 371 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1069 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0844 Lac-Chr2:6673479 Lac6g1069 Lac-Chr6:9819987 1.90E-88 dispersed
Lac4g2914 Lac-Chr4:47516069 Lac6g1069 Lac-Chr6:9819987 5.20E-62 dispersed
Lac5g2072 Lac-Chr5:39260596 Lac6g1069 Lac-Chr6:9819987 5.20E-35 dispersed
Lac6g1069 Lac-Chr6:9819987 Lac8g2411 Lac-Chr8:42217240 5.10E-34 dispersed
Lac11g0907 Lac-Chr11:9820578 Lac6g1069 Lac-Chr6:9819987 2.00E-07 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g1069 . 81 371 C2C2-Gata Transcription Factor Family AT5G25830 53.1 1.1e-69 261.2
Lac5g2072 . 42 315 C2C2-Gata Transcription Factor Family AT3G51080 51.1 1.3e-54 211.1
Lac1g2978 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 51.4 5.2e-40 162.2
Lac5g0347 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 54.0 1.9e-135 480.3
Lac11g2336 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.4 7.1e-135 478.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24033 PF00320 GATA 1.90E-15 CL0167 Lac TF