Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1089 ATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCTAATAAGAGTAGTAGTGAGTCGAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCACCCCGGAAATGGCCGCCCGTGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCCCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCGCCGCCTACGACAACGACGCCTCCCCTGATTCCTTCGTCTTCCTCGACGACTCCGCCTGGCTCCACGCCTTCGACGATTGCTACCACATCGATAATGACCACGGTAACCTCGATGTCGGTTTCATTTCCTCCGGTTTCAAAGGACTCTTCTGGGATTATCAAAATTAA 627 57.26 MSSNNELPQSNSAAEQPKKIKRIRNNSNSNKSSSESNNNNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDHHSHVDDDLTEIIQLPTLGAAYDNDASPDSFVFLDDSAWLHAFDDCYHIDNDHGNLDVGFISSGFKGLFWDYQN 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10126801 10127427 - Lag0005058.1 Lac6g1089 610858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1089 208 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Lac6g1089 208 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1089 208 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1089 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 136 IPR051032 -
Lac6g1089 208 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1089 208 MobiDBLite consensus disorder prediction 1 16 - -
Lac6g1089 208 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1089 208 Pfam AP2 domain 43 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1089 208 MobiDBLite consensus disorder prediction 26 45 - -
Lac6g1089 208 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677(InterPro)
Lac6g1089 208 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1089 208 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1089 208 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2894 Lac-Chr5:47137112 Lac6g1089 Lac-Chr6:10126801 7.70E-27 dispersed
Lac6g1089 Lac-Chr6:10126801 Lac6g1292 Lac-Chr6:12963221 1.80E-60 dispersed
Lac3g0945 Lac-Chr3:7626221 Lac6g1089 Lac-Chr6:10126801 7.10E-42 wgd
Lac4g2907 Lac-Chr4:47475878 Lac6g1089 Lac-Chr6:10126801 2.30E-37 wgd
Lac6g1089 Lac-Chr6:10126801 Lac8g1866 Lac-Chr8:36935829 2.90E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24034 PF00847 AP2 2.10E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1089 K09286 - csv:101206242 217.624