Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1097 ATGGCCAAAATTGCATTGGGAAGCATCGGTGAGGCCACCCAGCCCGACTGCATCCGAGCCCTCATCGTCGAGTTCATTGTCACCTTCCTCTTCGTCTTCGCTGGCGTCGGATCAGCCATAGCTGCCAATACACTATTGGCAAACGCACTGGTGGGGTTGTTCGCGGTTGCAGTCGCACATGCGCTTGTTGTGGCTGTGATGATCTCCACTGGCCACATTTCCGGTGGCCACCTCAACCCTGCCGTTACTCTCGGTCTCCTTTTCGGTGGCCACATCACTGTCGTCCGATCCGCTCTATATTGGATCATTCAGTTGCTAGCAGCGTCGGCTGCTAGTTTTCTGTTATCGTACCTCACCGGAGGCTTGCCCACTCCAATCCACACATTAGCAAGTGGAGTTGGCTACCTTCAGGGAGTGATATGGGAGATTATTCTCACCTTCTCCTTGCTGTTCACTGTCTATGGAACAATGGTTGATCCAAAGAAGGGAGCTCTCGATGGGTTGGGTCCATTGTTGACTGGGTTTGTGGTGGGGGCCAACATCTTGGCTGGTGGGGCTTTTTCTGGAGCTTCAATGAACCCAGCAAGATCATTTGGGCCTGCATTGGTGGCTGGGGACTGGACTGACCATTGGGTTTACTGGGTTGGACCTCTAATTGGTGGTGGGCTTGCTGGATTCATCTATGAAAATTTCTTCATTGAGAGATCTCATGTCCCTCTACCTAGGGCGGAAGATGGCTATTAG 744 52.42 MAKIALGSIGEATQPDCIRALIVEFIVTFLFVFAGVGSAIAANTLLANALVGLFAVAVAHALVVAVMISTGHISGGHLNPAVTLGLLFGGHITVVRSALYWIIQLLAASAASFLLSYLTGGLPTPIHTLASGVGYLQGVIWEIILTFSLLFTVYGTMVDPKKGALDGLGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVAGDWTDHWVYWVGPLIGGGLAGFIYENFFIERSHVPLPRAEDGY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10180397 10181310 - Lag0005066.1 Lac6g1097 610866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1097 247 FunFam Probable aquaporin TIP1-1 2 244 - -
Lac6g1097 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Lac6g1097 247 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Lac6g1097 247 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Lac6g1097 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g1097 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g1097 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g1097 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g1097 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g1097 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac6g1097 247 PANTHER AQUAPORIN-8 1 237 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lac6g1097 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1097 Lac-Chr6:10180397 Lac8g2480 Lac-Chr8:42714981 7.70E-63 dispersed
Lac4g2901 Lac-Chr4:47447596 Lac6g1097 Lac-Chr6:10180397 5.70E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1097 K09873 - csv:101205380 432.18