Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1160 ATGTTAGCTACATCGATCCATATTCAACAAGTTTGGAAATTTTGTACAGGAAATAAAGGGCTATGTGGAGAGCCACTACCACCATGTAAATCATCCACAAAAAAGTGGCCCATTCTCATCGGAGTCTTCTCCGGCGCCGCCGCCTTAATCCTCTTTCTCCTCCTCCTCTGCTGCTTTCTCCGGTCATCCAAATCATCCGCCGCCGTGTACGACGACGCAAAAATCAAACCCAAATTATTCTTCTCCCCCAAAACCCTCTTCAAAAGGCCGGAAAAGGCCTACCAATATCCCTCGACCGACTCGGACGACAACTCGAAGGTGAGCGGTCCGACCGGGTCGAGTCTGTACTTCGTGCGGACCGACCGGGCGCGGTTCGGCTTCCAAGAACTGCTCGGGGCGTCGGCGGAAGTTCTGGGCAGTGGGAGCTTTGGGTCATCTTACAAAGTGGTGCTTTCGGATGGGTCGGCGGTGGTGGTGAAGAGATTCCGGGAAATGAACGCCGCCGGAAGAGATGAGTTTTACGGCCACATGCGGCGGCTGGGACGGCTGTCGCATCCGAATTTGCTGCCGCTTGTTGCGTTTTATTATGGGAAAGATGATAAGCTTTTGGTGTCTGACTTTGTTAACAATGGCAGCTTGGCTAGTCACCTCCATGCCCGACGAGCACCAGGGAGTCCAGGGCTAGAGTGGGCAACGCGGCTAAATATCATAAAAGGAGTAGCGAGAGGCTTATTGTATCTGCACAAAGAGCTTCCCAATCTAAGCCTTCCACACGGCCACTTGAAATCCTCCAACGTCCTTCTCGACCAAAACTTCACTCCCTTTCTCTCCGACTACGCTCTCTCCCCGCTCCTCCCACCCTCCCACGCCCACCGCCACATGGCCGCCTTCAAGTCGCCGGAGTTCGCCGCCCACCACGACCGCACCTCCAAGTCCACCGACGTCTGGAGCCTCGGCATCTTGATCCTCGAGACCCTCACCGGCAGGTTCCCCGCCAACTATCTCTGCCACGGCAAGGGCGCCAACGCCGACCTCGCCGCCTGGGTCCAGACCGTCGTCCGGGAGGAGTGGACGGCGGAGGTGTTCGACGGCGACATGGATTGCTGTCGCTGTTGGGACGGAGAGATGTTGAAGCTTTTGAAGATTGGGATGTGTTGCTGCGAGTGGGAGGTTGGGAAGAGGTGGGGCTTGAAAATGGCCGTTGAGAAGATTGAGGAGGTCCATTTCAATGAGGTTGAGGATCATGAGGAGTATTATTCTTCTTATGGGAGTGATGGGGGATTCTATTCTAATTCGTCTCTTAACGGTCGTCGCACCGAGGATGAATCGTCGTTCTTGGGCTAA 1344 54.99 MLATSIHIQQVWKFCTGNKGLCGEPLPPCKSSTKKWPILIGVFSGAAALILFLLLLCCFLRSSKSSAAVYDDAKIKPKLFFSPKTLFKRPEKAYQYPSTDSDDNSKVSGPTGSSLYFVRTDRARFGFQELLGASAEVLGSGSFGSSYKVVLSDGSAVVVKRFREMNAAGRDEFYGHMRRLGRLSHPNLLPLVAFYYGKDDKLLVSDFVNNGSLASHLHARRAPGSPGLEWATRLNIIKGVARGLLYLHKELPNLSLPHGHLKSSNVLLDQNFTPFLSDYALSPLLPPSHAHRHMAAFKSPEFAAHHDRTSKSTDVWSLGILILETLTGRFPANYLCHGKGANADLAAWVQTVVREEWTAEVFDGDMDCCRCWDGEMLKLLKIGMCCCEWEVGKRWGLKMAVEKIEEVHFNEVEDHEEYYSSYGSDGGFYSNSSLNGRRTEDESSFLG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11031548 11033600 + Lag0005129.1 Lac6g1160 610929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1160 447 Pfam Protein kinase domain 136 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1160 447 Gene3D Transferase(Phosphotransferase) domain 1 208 424 - -
Lac6g1160 447 Gene3D Phosphorylase Kinase; domain 1 107 207 - -
Lac6g1160 447 SUPERFAMILY Protein kinase-like (PK-like) 136 408 IPR011009 -
Lac6g1160 447 ProSiteProfiles Protein kinase domain profile. 132 447 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1160 447 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 408 IPR046959 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0397 Lac-Chr3:2989084 Lac6g1160 Lac-Chr6:11031548 1.80E-95 dispersed
Lac6g1160 Lac-Chr6:11031548 Lac6g3114 Lac-Chr6:48530513 2.30E-65 dispersed
Lac2g0700 Lac-Chr2:5273842 Lac6g1160 Lac-Chr6:11031548 1.40E-113 wgd
Lac6g1160 Lac-Chr6:11031548 Lac8g1772 Lac-Chr8:35917428 1.50E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86265 PF00069 Pkinase 1.80E-26 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1160 K28077 - csv:101214710 625.55