Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1163 ATGTGGAATCAGAAACCTGTGAAGGAAAAGGAGGTCGTCACAGGCAATGAATTGGTGGGAATCGCAATTGACAAGGACAAAGGAAGCCAAAATGCTCTCAAATGGGCCACTGAGAATCTTCTTATCAAGGGACAAACTGCCATTCTCATCCATGTCAAACTCAGATCTTCTGGCTCTTCTCTGACTTCCCCTAAGGTAATGTCTGCAACTGACAATGGCAATGACAATGTCAATGTTTTGGTAAGCAAGGATATCGATCCGAACACGAGGGATTTGTTCCTTCCTTTTCGCTGCTTCTGTACCCGTAAAGATATATTCTGCAAAGACATCGTCATAGAAGATGTAGATGTTGCAAAAGCGTTGATTGAATATGTCAGTCAGGCTGGAATTGAGACTTTGGTTGTCGGGACCACAACGAAAGGTGGCTTCTTGAGATTCAAGACTACGGATATTCCGGGTAGTGTTATCAAAGGAGCACCAGATTTCTGCAATGTTTATGTCATATCAAGAGGAAAAATCCAAACTATGCGATCAGCCTCCCGTCCTGCTCCAACTTCTTCTCCTCTACGAAGTTTATTGCTAAGCCAATCCGGTAGCAGATCACCATTATCGGAGTCACAAATTTCTACGATTCAAAGACCTGAAAAGCCTCCCATTGAACCAGCACGTAGATCTCAAGACAACATCGAGTTCAGGTCTCCATTCACTAGGAAAGGCTACAATGGCAAAATGCCAGGGGAAATGAATCTGCCAGATACTGATATCTCTTTCGTTAGCTCGGGAAGGCCAAGTGTCGACAAATTGTTCCCTACATTCTTTGATGCCGATTCAGGAAGGATCCCCCCACGACTATCTAATGGAACCGATGGTGATATATATAATAGCTTCGAGTCACAACAGTTCGGACGTAAATCATTGGATGTAAACTATCCACCTGAATTTTCATCGGTCTTCTCGGAAGGTGACAGATTATCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAGATGAGGAGGCTGAAGCTGGAACTTAAGCAAACAATGGAAATGTATAGCACAGCCTGCAAGGAAGCACTTACAGCTAAGCAAAAGGCAATAGAGCTTCAACGATGGAAGTCTGAGGAAGAGCGGAGAATAGAGGAGGCAAGACTTGCTGAGGAAGCTGCATTAGAGATGGTCGAGCAGGAAAAGGCGAAGTCTCGAGCTGCTATCGAGGCTGCTGAAGCAGCTAAAAGGATTGCTGAGTTGGAAGCACAAAAGAGAATTAATGCTGAAATGAAAGCATTTAAGGAAGCAGAAGAGAAAAAGAAGGCATTAGATGCTTTGGCGCACAACGATGTCAGGTACCGGAAGTACTCGATCGAGGAGATCGAAGCTGCCACCGAGTTCTTTTCAGAATCGTTGAAGATTGGAGAGGGAGGTTATGGGCCTGTTTACAAGGGTTATCTGGACCACACACCAGTTGCAATCAAGGTCTTACGTCCGGATGCAGCTCAAGGAAGGTCACAGTTCCAGCAAGAGGTCGAAGTACTAAGCTGCATACGACATCCTAACATGGTTCTTCTCCTCGGAGCATGCCCCGAGTATGGCTGCTTGGTCTATGAGTTCATGGCAAATGGTAGCTTGGATGATTGCCTCTTTCGTCGGAAAGAAAACTCAAAACCTCTTTCTTGGCAACTTAGATTCAAAATTGCAGCAGAAATTGGCACTAGCTTGCTGTTCCTTCACCAGGCTAAGCCTGAGCCACTTGTGCACCGTGATTTGAAGCCGGCCAACATCTTGCTCGATCGTAACTACGTTAGCAAGATTAGCGATGTTGGTTTGGCCAGGCTTGTTCCCCCATCTGTAGCAGACAGTGTGACACAATATAGAATGACTTCAACTGCTGGCACATTCTGCTATATCGATCCTGAGTATCAACAAACCGGCATGCTCGGTGTAAAGTCCGACATATATTCTTTGGGAATCATGTTTTTGCAACTGATTACAGCAAAGCCACCAATGGGATTGACTCATCATGTGGGAAGAGCCATTGAGAAAGGAACTTTGCTTGAATTTCTTGATCCATCTGTCACTGATTGGCCAGCTGAAGAGAGCTTGTGCTTTGCAGAGTTGGCTTTAAAATGTGCAGAATTGAGAAGGAAAGATCGGCCTGATCTTCGTAAGGTTGTTCTTCCAGAACTCATCAGATTACGAACGATAGCCGAAGCCAGCATGTGCTCATCAGTGACGGAAGGTGTTAGCAGCCCTGAATTCAGCAACAGTCAGATTCGTCTCAAAACAGATGTAAGCGGTGAAAGCTTTTCCTCACGATCTTGCAATAGCCCTGGTGTCTTGTCGCACTCGCTGTCATAG 2358 45.38 MWNQKPVKEKEVVTGNELVGIAIDKDKGSQNALKWATENLLIKGQTAILIHVKLRSSGSSLTSPKVMSATDNGNDNVNVLVSKDIDPNTRDLFLPFRCFCTRKDIFCKDIVIEDVDVAKALIEYVSQAGIETLVVGTTTKGGFLRFKTTDIPGSVIKGAPDFCNVYVISRGKIQTMRSASRPAPTSSPLRSLLLSQSGSRSPLSESQISTIQRPEKPPIEPARRSQDNIEFRSPFTRKGYNGKMPGEMNLPDTDISFVSSGRPSVDKLFPTFFDADSGRIPPRLSNGTDGDIYNSFESQQFGRKSLDVNYPPEFSSVFSEGDRLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAIELQRWKSEEERRIEEARLAEEAALEMVEQEKAKSRAAIEAAEAAKRIAELEAQKRINAEMKAFKEAEEKKKALDALAHNDVRYRKYSIEEIEAATEFFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLDDCLFRRKENSKPLSWQLRFKIAAEIGTSLLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHHVGRAIEKGTLLEFLDPSVTDWPAEESLCFAELALKCAELRRKDRPDLRKVVLPELIRLRTIAEASMCSSVTEGVSSPEFSNSQIRLKTDVSGESFSSRSCNSPGVLSHSLS 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11055113 11059781 + Lag0005132.1 Lac6g1163 610932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1163 785 MobiDBLite consensus disorder prediction 177 248 - -
Lac6g1163 785 MobiDBLite consensus disorder prediction 177 213 - -
Lac6g1163 785 Pfam Universal stress protein family 19 160 IPR006016 -
Lac6g1163 785 Coils Coil 324 351 - -
Lac6g1163 785 Gene3D Transferase(Phosphotransferase) domain 1 538 743 - -
Lac6g1163 785 SMART serkin_6 465 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1163 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g1163 785 PANTHER OS02G0152300 PROTEIN 21 756 IPR051348 -
Lac6g1163 785 Gene3D HUPs 18 168 IPR014729 -
Lac6g1163 785 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 437 537 - -
Lac6g1163 785 Coils Coil 373 420 - -
Lac6g1163 785 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 169 - -
Lac6g1163 785 Coils Coil 423 443 - -
Lac6g1163 785 Pfam Protein kinase domain 468 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1163 785 Gene3D Phosphorylase Kinase; domain 1 442 537 - -
Lac6g1163 785 ProSiteProfiles Protein kinase domain profile. 465 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1163 785 SUPERFAMILY Protein kinase-like (PK-like) 449 725 IPR011009 -
Lac6g1163 785 MobiDBLite consensus disorder prediction 217 231 - -
Lac6g1163 785 CDD STK_N 18 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1364 Lac-Chr4:31871266 Lac6g1163 Lac-Chr6:11055113 5.00E-226 dispersed
Lac6g0173 Lac-Chr6:1398039 Lac6g1163 Lac-Chr6:11055113 1.60E-197 dispersed
Lac6g1163 Lac-Chr6:11055113 Lac6g3081 Lac-Chr6:48360680 6.20E-114 dispersed
Lac6g2191 Lac-Chr6:38373645 Lac6g1163 Lac-Chr6:11055113 4.70E-226 transposed
Lac2g0696 Lac-Chr2:5260915 Lac6g1163 Lac-Chr6:11055113 3.90E-287 wgd
Lac6g1163 Lac-Chr6:11055113 Lac8g1770 Lac-Chr8:35886736 4.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86266 PF00069 Pkinase 9.10E-39 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1163 - - - 0.0