Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1170 ATGACGGCACCGGTGTCGGTTGATGGGAACGGGAAGAGCAATATTGAGAATTTGGTGTCGGCTACTAGGTCGTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTAGGGTTTGCGTTGCAGAAAGCTGGGCCGAGATTGGAGGAGATTAGCCAACGATTGCCGACTTTAGAAGCGGCTGTTCGGCCTATTCGTGCTGATAAGGAAGCTCTCGTCGCCGTCGGTGGCCATATAAATCGGGCTGTTGGCCCGGCCGCGGCGGTGCTTAAGGTTTTTGATGCGGTTCATGGCCTTGAGAAGTCTCTGTTATCGGACCCAAGGAATGATCTGCCTGGTTATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTGGGGGATAACTGTGGACTGGCAATCCAATGGTTGGAGGATATAGTTGAGTATTTGGAAGATAATACTGTTGCTGACGAGAGATATCTTGCAAATTTGAAGAAGTCGTTGAAAAATCTGAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGACAAACTAGAGAATGAGTTTAGGCGTCTTTTAATGGAGCACAGTGTGCCTCTTCCCATGTCTTCTTCTCCGTCTCTTGGCGAGCAGGCTTGCATTGCCCCATCTCCATTGCCTGTGACTGTTATTCAGAAATTGCAGGCCATTCTCGGGAGATTGATTGCTAATAAAAGGCTTGAGAGATGCATATCCATTTATGTCGAAGTTCGTAGTTCTAATGTTAGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGACGTGCAGAGCATTGAGGGGTACATTGCAAAATGGGGCAAGCATTTGGAGTTTGCTGTGAAACACTTGTTTGAGGCTGAGTTTAAGCTTTGTAATGATGTTTTTGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCGACTCAAGCAGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAGAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTGCATCTTTGAACAAACTGAGACTGGACTTTAATAGGCTTTTTGGCGGGACTGCGTGTTTGGAAATTCAGAATCTGACTAGGGATCTCATTAAGAGGGTTATCGATGGTGCGGCCGAAATTTTCTGGGAACTTCTAGTTCAGGTGGAGTTACAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGCAATAAATTACTCAGTGATGATTATCGACCGATCCTGACCCAGGCCCTTGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTATCAGTGAGGTTACAAACCTTGTTAAAGCCATTGAGCAGAATCTGGAAACTTGGATAAAGGCTTATGAAGATTCTACCTTGGCAAATTTTTTCGCTATGAACAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGTCGGAGAACTAATGGGAGAGAAATTAAAGGAACACGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTACCCACTTAAGCAGGGAGGGTTTAATTATGTTCTCAGGTGGGCGAGCTACTGCACGCGATCTCGTTAAGAAACGTCTAAAGTTATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAATCAAACTGGGTTATGACTGACAAAGAATTGAGGGAGAAGACGTGCCAACTTATAGTTCAAACCATCGTGCCTGTATATCGCAGCTATATGCAGAATTATGGCCCCCTCGTCGAGCAAGACGCAAGTTCCAGTAAGTACGCGAAATACACCATGCAGAATCTGGAGAAAATGTTACTGTCCCTTTTTCAGCCTAAGCCACTTAGGTTCAGCAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAGCAGATCATCGTCGTTCCAACTCCATGGTTATGTAA 2049 44.07 MTAPVSVDGNGKSNIENLVSATRSLKASLEKSRALGFALQKAGPRLEEISQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADERYLANLKKSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLMEHSVPLPMSSSPSLGEQACIAPSPLPVTVIQKLQAILGRLIANKRLERCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGTACLEIQNLTRDLIKRVIDGAAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLISEVTNLVKAIEQNLETWIKAYEDSTLANFFAMNNHWHLYKHLKGTKVGELMGEKLKEHEQYKDYYAAVFLRDSWSKLPTHLSREGLIMFSGGRATARDLVKKRLKLFNEAFEDMYKKQSNWVMTDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTMQNLEKMLLSLFQPKPLRFSSLKVRQTSGKFSNGAADHRRSNSMVM 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11109151 11111199 + Lag0005139.1 Lac6g1170 610939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1170 682 Pfam Exo70 exocyst complex subunit C-terminal 290 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lac6g1170 682 FunFam Exocyst subunit Exo70 family protein 137 654 - -
Lac6g1170 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 26 650 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac6g1170 682 Coils Coil 155 175 - -
Lac6g1170 682 Pfam Exocyst complex component Exo70 N-terminal 82 197 - -
Lac6g1170 682 Gene3D Exocyst complex component Exo70 135 654 - -
Lac6g1170 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1170 K07195 - - csv:101207478 1270.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3080 Lac-Chr4:48924831 Lac6g1170 Lac-Chr6:11109151 3.20E-180 dispersed
Lac6g0241 Lac-Chr6:1967922 Lac6g1170 Lac-Chr6:11109151 8.70E-62 dispersed
Lac6g1170 Lac-Chr6:11109151 Lac7g2632 Lac-Chr7:44956576 4.00E-08 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0596 . 10 653 EXO70 exocyst subunit family AT5G03540 76.6 1.4e-284 976.1
Lac1g2316 . 1 600 EXO70 exocyst subunit family AT5G03540 71.6 4.2e-249 858.2
Lac1g2316 . 1 603 EXO70 exocyst subunit family AT5G52340 78.6 5.2e-273 937.6
Lac13g0596 . 12 653 EXO70 exocyst subunit family AT5G52340 74.0 1.3e-271 932.9
Lac13g0596 . 147 653 EXO70 exocyst subunit family AT5G52350 58.7 4.9e-164 575.5
Lac1g2316 . 145 603 EXO70 exocyst subunit family AT5G52350 61.7 1.7e-156 550.4
Lac7g2884 . 1 624 EXO70 exocyst subunit family AT5G58430 67.1 2.0e-245 845.9
Lac7g2884 . 1 623 EXO70 exocyst subunit family AT1G07000 51.2 3.8e-172 602.4
Lac7g1288 . 55 668 EXO70 exocyst subunit family AT5G13150 53.1 1.2e-174 610.9
Lac8g1970 . 102 715 EXO70 exocyst subunit family AT5G13990 53.8 3.3e-188 656.0
Lac12g2533 . 106 706 EXO70 exocyst subunit family AT1G72470 65.2 8.2e-218 754.2
Lac12g2533 . 106 704 EXO70 exocyst subunit family AT1G54090 63.3 2.1e-213 739.6
Lac12g2533 . 106 705 EXO70 exocyst subunit family AT3G14090 65.3 6.4e-223 771.2
Lac10g0582 . 19 657 EXO70 exocyst subunit family AT5G50380 64.2 7.0e-231 797.7
Lac3g0086 . 13 650 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-228 788.9
Lac6g1170 . 15 682 EXO70 exocyst subunit family AT4G31540 73.7 4.5e-294 1007.7
Lac13g0853 . 59 609 EXO70 exocyst subunit family AT3G55150 50.8 2.3e-151 533.5
Lac7g2632 . 1 172 EXO70 exocyst subunit family AT3G55150 52.3 1.6e-43 175.3
Lac13g0853 . 24 606 EXO70 exocyst subunit family AT2G39380 51.1 9.0e-156 548.1
Lac10g3074 . 25 632 EXO70 exocyst subunit family AT3G09520 54.9 2.0e-179 626.7
Lac9g2512 . 12 600 EXO70 exocyst subunit family AT5G59730 50.2 1.4e-156 550.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005903 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39