Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1170 ATGACGGCACCGGTGTCGGTTGATGGGAACGGGAAGAGCAATATTGAGAATTTGGTGTCGGCTACTAGGTCGTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTAGGGTTTGCGTTGCAGAAAGCTGGGCCGAGATTGGAGGAGATTAGCCAACGATTGCCGACTTTAGAAGCGGCTGTTCGGCCTATTCGTGCTGATAAGGAAGCTCTCGTCGCCGTCGGTGGCCATATAAATCGGGCTGTTGGCCCGGCCGCGGCGGTGCTTAAGGTTTTTGATGCGGTTCATGGCCTTGAGAAGTCTCTGTTATCGGACCCAAGGAATGATCTGCCTGGTTATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTGGGGGATAACTGTGGACTGGCAATCCAATGGTTGGAGGATATAGTTGAGTATTTGGAAGATAATACTGTTGCTGACGAGAGATATCTTGCAAATTTGAAGAAGTCGTTGAAAAATCTGAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGACAAACTAGAGAATGAGTTTAGGCGTCTTTTAATGGAGCACAGTGTGCCTCTTCCCATGTCTTCTTCTCCGTCTCTTGGCGAGCAGGCTTGCATTGCCCCATCTCCATTGCCTGTGACTGTTATTCAGAAATTGCAGGCCATTCTCGGGAGATTGATTGCTAATAAAAGGCTTGAGAGATGCATATCCATTTATGTCGAAGTTCGTAGTTCTAATGTTAGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGACGTGCAGAGCATTGAGGGGTACATTGCAAAATGGGGCAAGCATTTGGAGTTTGCTGTGAAACACTTGTTTGAGGCTGAGTTTAAGCTTTGTAATGATGTTTTTGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCGACTCAAGCAGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAGAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTGCATCTTTGAACAAACTGAGACTGGACTTTAATAGGCTTTTTGGCGGGACTGCGTGTTTGGAAATTCAGAATCTGACTAGGGATCTCATTAAGAGGGTTATCGATGGTGCGGCCGAAATTTTCTGGGAACTTCTAGTTCAGGTGGAGTTACAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGCAATAAATTACTCAGTGATGATTATCGACCGATCCTGACCCAGGCCCTTGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTATCAGTGAGGTTACAAACCTTGTTAAAGCCATTGAGCAGAATCTGGAAACTTGGATAAAGGCTTATGAAGATTCTACCTTGGCAAATTTTTTCGCTATGAACAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGTCGGAGAACTAATGGGAGAGAAATTAAAGGAACACGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTACCCACTTAAGCAGGGAGGGTTTAATTATGTTCTCAGGTGGGCGAGCTACTGCACGCGATCTCGTTAAGAAACGTCTAAAGTTATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAATCAAACTGGGTTATGACTGACAAAGAATTGAGGGAGAAGACGTGCCAACTTATAGTTCAAACCATCGTGCCTGTATATCGCAGCTATATGCAGAATTATGGCCCCCTCGTCGAGCAAGACGCAAGTTCCAGTAAGTACGCGAAATACACCATGCAGAATCTGGAGAAAATGTTACTGTCCCTTTTTCAGCCTAAGCCACTTAGGTTCAGCAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAGCAGATCATCGTCGTTCCAACTCCATGGTTATGTAA 2049 44.07 MTAPVSVDGNGKSNIENLVSATRSLKASLEKSRALGFALQKAGPRLEEISQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADERYLANLKKSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLMEHSVPLPMSSSPSLGEQACIAPSPLPVTVIQKLQAILGRLIANKRLERCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGTACLEIQNLTRDLIKRVIDGAAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLISEVTNLVKAIEQNLETWIKAYEDSTLANFFAMNNHWHLYKHLKGTKVGELMGEKLKEHEQYKDYYAAVFLRDSWSKLPTHLSREGLIMFSGGRATARDLVKKRLKLFNEAFEDMYKKQSNWVMTDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTMQNLEKMLLSLFQPKPLRFSSLKVRQTSGKFSNGAADHRRSNSMVM 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11109151 11111199 + Lag0005139.1 Lac6g1170 610939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1170 682 Pfam Exo70 exocyst complex subunit C-terminal 290 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lac6g1170 682 FunFam Exocyst subunit Exo70 family protein 137 654 - -
Lac6g1170 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 26 650 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac6g1170 682 Coils Coil 155 175 - -
Lac6g1170 682 Pfam Exocyst complex component Exo70 N-terminal 82 197 - -
Lac6g1170 682 Gene3D Exocyst complex component Exo70 135 654 - -
Lac6g1170 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g3080 Lac-Chr4:48924831 Lac6g1170 Lac-Chr6:11109151 3.20E-180 dispersed
Lac6g0241 Lac-Chr6:1967922 Lac6g1170 Lac-Chr6:11109151 8.70E-62 dispersed
Lac6g1170 Lac-Chr6:11109151 Lac7g2632 Lac-Chr7:44956576 4.00E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1170 K07195 - csv:101207478 1270.76