Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g1186 | ATGGGCGGCGATAAGGCCATCACTCTCGAGGAGATTAAAAACGAGGCCGTTGATCTGGAACATATTCCAATAGAGGAAGTGTTTGAACAGTTGAAATGTACACGAGAAGGTCTGACATCAGAGGAAGGAGCCCACCGGCTTCAAGTTTTTGGACCCAACAAACTAGAAGAGAAGAAGGAAAGCAAAATTCTCAAGTTTTTGGGTTTCATGTGGAATCCTTTATCATGGGTCATGGAAGCTGCTGCCTTAATGGCAATAGTCTTGGCAAATGGTGGTGGAAGACCACCGGACTGGCAAGACTTTGTGGGGATCATTGCTTTACTTTTTATCAACTCTACCATTAGTTTTATTGAAGAAAACAATGCCGGTAACGCGGCTGCTGCACTCATGGCTGGTCTTGCTCCCAAAACTAAGGTTCTAAGAGATGGTCGTTGGAGTGAGCAAGAGGCTGCTATTCTTGTTCCTGGAGATATCATCAGCATTAAGCTTGGAGATATAATACCAGCAGACGCTCGTCTTCTAGAGGGCGATCCTTTAAAGATTGATCAATCTGCTTTAACTGGAGAATCACTCCCAGTCACCAAGAACCCCTCAGATGAAGTATTTTCTGGCTCTACATGTAAACAGGGTGAAATTGAAGCAGTTGTGATTGCCACTGGCGTGCACACGTTTTTTGGCAAAGCTGCTCACTTGGTAGATAGCACCAATCAAGTTGGACACTTCCAGAAAGTTCTTACTGCTATTGGTAATTTCTGCATTTGCTCAATCGCTGTTGGAATACTAATCGAGCTTATAGTCATGTACCCGATACAACGACGCAAGTATAGAGATGGAATTGACAACTTGCTGGTCCTTTTGATTGGTGGAATTCCCATTGCAATGCCAACCGTTTTGTCTGTCACTATGGCCATTGGTTCTCATAGGCTTTCTCAGCAGGGTGCCATTACTAAGAGAATGACAGCCATTGAGGAAATGGCTGGCATGGATGTCCTCTGCAGCGATAAGACAGGAACTCTGACCCTTAACAAGCTAACGGTGGACAGAAGCTTGATCGAAGTGTTTGTCAAGGGTGTCGAGAAAGAGTATGTTATTCTTCTTGCAGCCAGGGCTTCTAGAACAGAGAATCAGGATGCTATTGATGCAGCTATAGTAGGAATGCTTGCAGATCCCAAAGAGGCACGAGCAGGAATTAGGGAGGTTCATTTCCTTCCATTCAATCCTGTTGACAAAAGAACTGCCCTAACCTATATTGATTCTGATGGAAATTGGCACCGAGTAAGCAAAGGTGCTCCTGAGCAGATCCTAAATCTTTGCAACTCCAGGGAAGACATTAGAAGAAAGGTTCATTCAGTGATTGACAAGTTTGCAGAACGTGGACTTCGTTCACTGGGTGTTGCAAGACAGGAAGTACCTGAAAAATCAAAAGATAGCCCTGGAGGACCATGGCAGCTTGTTGGTTTGTTGCCTCTATTTGATCCTCCTAGGCATGATAGTGCAGAAACCATAAGAAGAGCTCTGAATCTCGGAGTAAATGTCAAAATGATTACTGGGGATCAACTTGCCATTGGCAAGGAAACAGGGCGTAGACTTGGTATGGGAACAAATATGTACCCTTCCTCATCATTACTTGGTCAAGACAAGGATGAATCTATTGCTTCACTTCCTGTGGATGAGTTGATTGAGAAGGCAGATGGGTTTGCTGGAGTATTTCCAGAACACAAATATGAAATTGTGAAAAGGCTGCAGGAAAGGAAACATATATGTGGAATGACAGGAGATGGTGTTAATGATGCTCCTGCTTTGAAGAAGGCAGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCCAGAAGTGCTTCGGATATTGTCCTTACAGAACCAGGATTGAGTGTAATTATTAGTGCGGTGCTAACCAGCAGGGCTATTTTCCAGAGGATGAAGAATTACACGATTTATGCAGTTTCAATTACAATTCGTATAGTGTTTGGCTTCATGTTCATTGCTTTGATTTGGAAGTTCGATTTCGCTCCCTTCATGGTTTTAATAATAGCCATTCTGAATGATGGAACAATCATGACAATTTCAAAGGATCGAGTAAAGCCATCTCCACAGCCTGATAGTTGGAAACTGAAGGAGATTTTTGGAACTGGCATTGTGCTTGGAGGATACCTGGCACTAATGACAGTACTATTCTTTTGGGCTGTTAAAGATACAAACTTTTTCTCAGAAAAATTTCATGTGAAACCCTTGAAGGATAGTCCTCAAGAACTGATGGCAGCTTTGTATCTACAAGTCAGCATAATAAGTCAGGCCCTTATTTTTGTCACAAGGTCTCGCAGCTGGTCATACATGGAACGTCCTGGACTCCTCCTAGTGAGTGCTTTCATCATTGCTCAGCTGGTGGCAACTGTGATAGCTGTTTATGCAAATTGGGGTTTTGCAAGGATCAAAGGAATGGGATGGGGATGGGCTGGTGTTATCTGGCTGTACAGCTTGGTAACATATATCCCTCTCGACATTTTGAAATTTGGAATCCGGTATGCCCACAGTGGCAAGGCTTGGGACACTCTTCTGGAGAACAAGACTGCTTTCACAACCAAAAAGGACTATGGCAAAGAAGAGAGAGAAGCACAGTGGGCGGCTGCACAGAGGACTCTACATGGTCTACAACCACCTGAAAACTCCAATCTCTTCCCTGAGAAAAGCAGTTACAGGGAGCTTTCTGAGATTGCAGAGCAAGCCAAGCGCCGTGCTGAGGTTGCCAGGCTCCGGGAGTTGCATACACTTAAGGGTCATGTTGAATCAGTGGTGAAGCTGAAAGGATTGGACATTGATACAATCCAACAACACTACACAGTTTAA | 2865 | 43.98 | MGGDKAITLEEIKNEAVDLEHIPIEEVFEQLKCTREGLTSEEGAHRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIVLANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLIEVFVKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRVSKGAPEQILNLCNSREDIRRKVHSVIDKFAERGLRSLGVARQEVPEKSKDSPGGPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFGTGIVLGGYLALMTVLFFWAVKDTNFFSEKFHVKPLKDSPQELMAALYLQVSIISQALIFVTRSRSWSYMERPGLLLVSAFIIAQLVATVIAVYANWGFARIKGMGWGWAGVIWLYSLVTYIPLDILKFGIRYAHSGKAWDTLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPENSNLFPEKSSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV | 954 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 11288308 | 11296201 | - | Lag0005155.1 | Lac6g1186 | 610955 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g1186 | 954 | SFLD | p-type atpase | 314 | 642 | IPR044492 | - | |
| Lac6g1186 | 954 | SMART | Cation_ATPase_N_a_2 | 18 | 90 | IPR004014 | - | |
| Lac6g1186 | 954 | SUPERFAMILY | Calcium ATPase, transduction domain A | 135 | 232 | IPR008250 | - | |
| Lac6g1186 | 954 | CDD | P-type_ATPase_H | 37 | 844 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Lac6g1186 | 954 | SFLD | Haloacid Dehalogenase | 314 | 642 | - | - | |
| Lac6g1186 | 954 | Gene3D | - | 135 | 219 | - | - | |
| Lac6g1186 | 954 | Gene3D | - | 329 | 628 | IPR023214 | - | |
| Lac6g1186 | 954 | Pfam | haloacid dehalogenase-like hydrolase | 328 | 605 | - | - | |
| Lac6g1186 | 954 | FunFam | Plasma membrane ATPase | 135 | 219 | - | - | |
| Lac6g1186 | 954 | Gene3D | - | 97 | 818 | - | - | |
| Lac6g1186 | 954 | FunFam | ATPase 4 plasma membrane-type | 576 | 818 | - | - | |
| Lac6g1186 | 954 | Pfam | E1-E2 ATPase | 134 | 311 | - | - | |
| Lac6g1186 | 954 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 18 | 850 | IPR023298 | - | |
| Lac6g1186 | 954 | NCBIfam | HAD-IC family P-type ATPase | 566 | 681 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g1186 | 954 | NCBIfam | HAD-IC family P-type ATPase | 104 | 351 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g1186 | 954 | Gene3D | - | 903 | 954 | - | - | |
| Lac6g1186 | 954 | FunFam | Plasma membrane ATPase | 484 | 639 | - | - | |
| Lac6g1186 | 954 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 20 | 878 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Lac6g1186 | 954 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 334 | 340 | IPR018303 | - | |
| Lac6g1186 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 448 | 466 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g1186 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 591 | 607 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g1186 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 563 | 579 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g1186 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 622 | 647 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g1186 | 954 | PRINTS | H+-transporting ATPase (proton pump) signature | 763 | 784 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g1186 | 954 | FunFam | Plasma membrane ATPase | 344 | 491 | - | - | |
| Lac6g1186 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 486 | 497 | - | - | |
| Lac6g1186 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 614 | 626 | - | - | |
| Lac6g1186 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 591 | 610 | - | - | |
| Lac6g1186 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 508 | 518 | - | - | |
| Lac6g1186 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 332 | 346 | - | - | |
| Lac6g1186 | 954 | PRINTS | P-type cation-transporting ATPase superfamily signature | 182 | 196 | - | - | |
| Lac6g1186 | 954 | Pfam | Cation transporter/ATPase, N-terminus | 21 | 84 | IPR004014 | - | |
| Lac6g1186 | 954 | Coils | Coil | 905 | 925 | - | - | |
| Lac6g1186 | 954 | SUPERFAMILY | HAD-like | 328 | 638 | IPR036412 | - | |
| Lac6g1186 | 954 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 37 | 809 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Lac6g1186 | 954 | Gene3D | - | 344 | 491 | IPR023299 | GO:0000166(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0381 | Lac-Chr10:2961247 | Lac6g1186 | Lac-Chr6:11288308 | 0.00E+00 | dispersed | |
| Lac3g0332 | Lac-Chr3:2398385 | Lac6g1186 | Lac-Chr6:11288308 | 0.00E+00 | dispersed | |
| Lac3g0642 | Lac-Chr3:4975235 | Lac6g1186 | Lac-Chr6:11288308 | 0.00E+00 | dispersed | |
| Lac6g1186 | Lac-Chr6:11288308 | Lac6g2308 | Lac-Chr6:40409927 | 0.00E+00 | dispersed | |
| Lac3g0187 | Lac-Chr3:1323814 | Lac6g1186 | Lac-Chr6:11288308 | 0.00E+00 | transposed | |
| Lac2g0678 | Lac-Chr2:5076289 | Lac6g1186 | Lac-Chr6:11288308 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g1186 | K01535 | - | csv:101213505 | 1801.56 |