Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1229 ATGGGGAAGGAAGAAGATAGAGAGGAGAAAGAAGATGTAGCCGGTAATTTCCTCCAATTTTCCTGTTCAGCGCTTCTTCTCATCAGCTTACTTAACTCGAATTTCTCTTTGAGGCTCGAGGGGTTCGGATCTCGCGTCTGTGGAGAGTTTGAGCCTACTGCGTTGAAGATGGCTGTCAAAACAGCGCAATCGTTTAGAGATCGGACGCAGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCGCGGGGACAACTGGACCAAGTGGTGGTACAAAATCAGAGGAGCAGCGCTCTGCTGTGGCTCTTCAGTCTGAATTCAATAAGAGAGCTTCCAAGATTGGGTTAGGGATTCATCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACATTGAACTCTGCAGTTGTAGATCTTCAGCTTCACTGCAACTCTAGAAATGAAAGTGGAAACATGTCCAGTGATACTACGAGTCATTCAACCACTGTGGTAGATGATCTTAAAAATCGACTGATGAGCACTACAAAAGAATTTAAAGAAGTCCTAACCATGAGAACAGAAAATTTGAAGGTTCATGAGAACCGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTGCGCCAACGCCCATTAGCTTCTAGGTCAGCTGCTGGTGCCTCAAGCGCACCCCCTCCTCCATGGGCCAAGGCATCTACATCTTTTTCCAAAACATCTCCCGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAGCAGCAGCAGCAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTTAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGTTCTACCCTCATGCACCCATTTCAGAATTGCTGATTATATGA 1074 44.6 MGKEEDREEKEDVAGNFLQFSCSALLLISLLNSNFSLRLEGFGSRVCGEFEPTALKMAVKTAQSFRDRTQEFQNITERLKKSFSSGAGTTGPSGGTKSEEQRSAVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLHCNSRNESGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRFYPHAPISELLII 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11959404 11963631 + Lag0005198.1 Lac6g1229 610998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1229 357 SUPERFAMILY t-snare proteins 108 341 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lac6g1229 357 Gene3D - 104 344 - -
Lac6g1229 357 MobiDBLite consensus disorder prediction 226 246 - -
Lac6g1229 357 MobiDBLite consensus disorder prediction 263 301 - -
Lac6g1229 357 PANTHER SYNTAXIN 110 342 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac6g1229 357 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 304 341 IPR000727 -
Lac6g1229 357 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 62 81 IPR021538 -
Lac6g1229 357 MobiDBLite consensus disorder prediction 224 301 - -
Lac6g1229 357 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1100 Lac-Chr13:9407710 Lac6g1229 Lac-Chr6:11959404 2.10E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1229 K08490 - csv:101203633 456.832