Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1234 ATGATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGCGAAGGAGACTCTTGCCCTTTATTAATGGCCCGGCCAGAAAATTCTAGCAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAATTCAAATGGCTTAAATTCATCACAACCTGAAGATAGACCTTCAAGTAGTACACGAGTTCCATTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCTCGACGTCGCAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGAGCACCTTTGTTTGCATGGATTGTGGGATATGCATCGGGATGTGGTGCCACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATTCTCTTCAATCCAATCAGAATTCTACTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGACATCAGAAGGGGAAGAACTTCAGCATCCTGCCCCATCCTCCAGAACCAGTCAAGGGTCAGGAGTACTGACAGCAAGATTAAAAGTATTGGTTGAATATTTTAAGATGGGCTTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACAACAGAATCTATTAATGCATTACCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAGGTGGAGATGATAGAGAAAACAACTCCGGGGCTGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCAAAATACGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAACGCACTGTGCCCACTTTGCAAAACCGAGGTCGGTGAGAGTATCATCGGCTCTCTTGAGGGGACAAATAGACAACAACAGGGTGATTAA 1281 43.01 MMDVPSVELNCESEGDSCPLLMARPENSSSSEHIIDITGTGDSAPSSLPHGRNSNGLNSSQPEDRPSSSTRVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSNQNSTRINVPAGPFSLSVSRTSEGEELQHPAPSSRTSQGSGVLTARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKLKKSRGGDDRENNSGAGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKTEVGESIIGSLEGTNRQQQGD 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11986597 11990547 - Lag0005203.1 Lac6g1234 611003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1234 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 22 409 - -
Lac6g1234 426 SMART ringv_2 363 405 IPR011016 GO:0008270(InterPro)
Lac6g1234 426 MobiDBLite consensus disorder prediction 1 97 - -
Lac6g1234 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 412 IPR013083 -
Lac6g1234 426 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Lac6g1234 426 SMART ring_2 364 404 IPR001841 -
Lac6g1234 426 MobiDBLite consensus disorder prediction 23 91 - -
Lac6g1234 426 FunFam E3 ubiquitin-protein ligase 347 413 - -
Lac6g1234 426 Pfam Ring finger domain 364 405 IPR001841 -
Lac6g1234 426 SUPERFAMILY RING/U-box 356 410 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2365 Lac-Chr10:36392486 Lac6g1234 Lac-Chr6:11986597 3.90E-28 dispersed
Lac2g1539 Lac-Chr2:13361131 Lac6g1234 Lac-Chr6:11986597 8.30E-49 dispersed
Lac6g1234 Lac-Chr6:11986597 Lac7g0266 Lac-Chr7:2077153 1.30E-41 dispersed
Lac7g2720 Lac-Chr7:46328290 Lac6g1234 Lac-Chr6:11986597 1.80E-06 dispersed
Lac6g1234 Lac-Chr6:11986597 Lac1g1587 Lac-Chr1:37098874 4.30E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1234 - - - 0.0