Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1292 ATGAGCGTTCATTTCTTCCCCAAAATCCCCAAACCAAAACCCACAACAATAATAATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCCAATAAGAGTAGTAGTGAGTCGAACAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTTCCCACCCCGGAAATGGCCGCCCATGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCCCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCTTCCGATTGCCTTCTTCTCGTGTTCCTCGTCAATCGTGGAGGATTTGTCTGTATTGGTGTAATGTCGCTGGATGGAGATGA 603 55.56 MSVHFFPKIPKPKPTTIIMSSNNELPQSNSAAAEQPKKIKRIRNNSNSNKSSSESNNNNNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAAHAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDDHHSHVDDDLTEIIQLPTLGFRLPSSRVPRQSWRICLYWCNVAGWR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12963221 12963823 + Lag0005261.1 Lac6g1292 611061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1292 200 CDD AP2 65 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1292 200 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1292 200 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677(InterPro)
Lac6g1292 200 SMART rav1_2 64 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1292 200 MobiDBLite consensus disorder prediction 15 34 - -
Lac6g1292 200 MobiDBLite consensus disorder prediction 45 65 - -
Lac6g1292 200 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1292 200 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1292 200 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Lac6g1292 200 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1292 200 MobiDBLite consensus disorder prediction 1 66 - -
Lac6g1292 200 Pfam AP2 domain 63 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1292 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 48 155 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0945 Lac-Chr3:7626221 Lac6g1292 Lac-Chr6:12963221 1.30E-35 dispersed
Lac4g2907 Lac-Chr4:47475878 Lac6g1292 Lac-Chr6:12963221 1.90E-36 dispersed
Lac6g1089 Lac-Chr6:10126801 Lac6g1292 Lac-Chr6:12963221 1.80E-60 dispersed
Lac6g1292 Lac-Chr6:12963221 Lac6g3016 Lac-Chr6:47767594 6.10E-34 dispersed
Lac10g0130 Lac-Chr10:978740 Lac6g1292 Lac-Chr6:12963221 1.70E-47 transposed
Lac1g2230 Lac-Chr1:43698925 Lac6g1292 Lac-Chr6:12963221 8.50E-22 transposed
Lac1g2540 Lac-Chr1:46791092 Lac6g1292 Lac-Chr6:12963221 2.80E-27 transposed
Lac1g3404 Lac-Chr1:53567529 Lac6g1292 Lac-Chr6:12963221 7.80E-29 transposed
Lac5g2486 Lac-Chr5:43408513 Lac6g1292 Lac-Chr6:12963221 4.90E-37 transposed
Lac7g0665 Lac-Chr7:5336176 Lac6g1292 Lac-Chr6:12963221 7.00E-42 transposed
Lac8g2623 Lac-Chr8:43797113 Lac6g1292 Lac-Chr6:12963221 2.70E-27 transposed
Lac11g1296 Lac-Chr11:19597654 Lac6g1292 Lac-Chr6:12963221 2.30E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24040 PF00847 AP2 4.90E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1292 K09286 - csv:101206242 186.808