Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g1292 | ATGAGCGTTCATTTCTTCCCCAAAATCCCCAAACCAAAACCCACAACAATAATAATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCCAATAAGAGTAGTAGTGAGTCGAACAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTTCCCACCCCGGAAATGGCCGCCCATGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCCCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCTTCCGATTGCCTTCTTCTCGTGTTCCTCGTCAATCGTGGAGGATTTGTCTGTATTGGTGTAATGTCGCTGGATGGAGATGA | 603 | 55.56 | MSVHFFPKIPKPKPTTIIMSSNNELPQSNSAAAEQPKKIKRIRNNSNSNKSSSESNNNNNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAAHAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDDHHSHVDDDLTEIIQLPTLGFRLPSSRVPRQSWRICLYWCNVAGWR | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12963221 | 12963823 | + | Lag0005261.1 | Lac6g1292 | 611061 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g1292 | 200 | CDD | AP2 | 65 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g1292 | 200 | ProSiteProfiles | AP2/ERF domain profile. | 64 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g1292 | 200 | SUPERFAMILY | DNA-binding domain | 64 | 122 | IPR016177 | GO:0003677(InterPro) | |
Lac6g1292 | 200 | SMART | rav1_2 | 64 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g1292 | 200 | MobiDBLite | consensus disorder prediction | 15 | 34 | - | - | |
Lac6g1292 | 200 | MobiDBLite | consensus disorder prediction | 45 | 65 | - | - | |
Lac6g1292 | 200 | PRINTS | Ethylene responsive element binding protein signature | 87 | 103 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g1292 | 200 | PRINTS | Ethylene responsive element binding protein signature | 65 | 76 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g1292 | 200 | FunFam | Ethylene-responsive transcription factor 2 | 63 | 122 | - | - | |
Lac6g1292 | 200 | Gene3D | AP2/ERF domain | 64 | 122 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g1292 | 200 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Lac6g1292 | 200 | Pfam | AP2 domain | 63 | 113 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac6g1292 | 200 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 48 | 155 | IPR051032 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0945 | Lac-Chr3:7626221 | Lac6g1292 | Lac-Chr6:12963221 | 1.30E-35 | dispersed | |
Lac4g2907 | Lac-Chr4:47475878 | Lac6g1292 | Lac-Chr6:12963221 | 1.90E-36 | dispersed | |
Lac6g1089 | Lac-Chr6:10126801 | Lac6g1292 | Lac-Chr6:12963221 | 1.80E-60 | dispersed | |
Lac6g1292 | Lac-Chr6:12963221 | Lac6g3016 | Lac-Chr6:47767594 | 6.10E-34 | dispersed | |
Lac10g0130 | Lac-Chr10:978740 | Lac6g1292 | Lac-Chr6:12963221 | 1.70E-47 | transposed | |
Lac1g2230 | Lac-Chr1:43698925 | Lac6g1292 | Lac-Chr6:12963221 | 8.50E-22 | transposed | |
Lac1g2540 | Lac-Chr1:46791092 | Lac6g1292 | Lac-Chr6:12963221 | 2.80E-27 | transposed | |
Lac1g3404 | Lac-Chr1:53567529 | Lac6g1292 | Lac-Chr6:12963221 | 7.80E-29 | transposed | |
Lac5g2486 | Lac-Chr5:43408513 | Lac6g1292 | Lac-Chr6:12963221 | 4.90E-37 | transposed | |
Lac7g0665 | Lac-Chr7:5336176 | Lac6g1292 | Lac-Chr6:12963221 | 7.00E-42 | transposed | |
Lac8g2623 | Lac-Chr8:43797113 | Lac6g1292 | Lac-Chr6:12963221 | 2.70E-27 | transposed | |
Lac11g1296 | Lac-Chr11:19597654 | Lac6g1292 | Lac-Chr6:12963221 | 2.30E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24040 | PF00847 | AP2 | 4.90E-14 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g1292 | K09286 | - | csv:101206242 | 186.808 |