Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1293 ATGGCGATCCAGCTTGTCTATGCTTCCAAATATGCCCTATTTTCAGTCCTCGCTATTCCTCTGCTGCTCGGAAGTTTCACTATGGGGAAGCCAAGAGATCAAACTGTGAAAGTGATTTGCGGGAAAGAACTGGAGCACAACACCACGGCCTACGTCCCTAACTTTTTTGGTTCCATGGAAAAAGTCAGACAACAAATCAGAACTTCCGGATTTGGAACGGCGGGTACAGGAATAGGACCTGATGCAAGCTATGGGCTTGCCCAGTGCCATGAAGATCTCTCATCCCACGAATGTGTGCTGTGCCATTCTCAAGCACGTACGGTGCTTCCCCAATGCTTCCCTTTCAACGGCGGCCGAGCATTCATCGATGGCTGCTTCATGAGGTTCGAAAACTATAGCTTTTTTGATGAATATAAAGGACCCGAAGATACTGCAATCTGCGGGAACTTGACCCAAAATGACCCCAACTATAGACAAGCAGCCAGGGATGCGGTGATGCAGGTGGTCAACGGTGCACCAGCCAGCAAAGGCTTTGCGAAAGCTCGAGTGGCTGTGGGGGGGATGGCGAATGAGTCTGCCGCTTATGCTCTGGGTCAGTGCTGGAGAAGCTTGAACCGCAGCTCTTGCAACTCATGTTTGCAAATTGCTTCTGCTTCGATGTTGCGGTGTTTGCCTCAATCGGAAGGGCGAGCATTGTACACAGGCTGCTTCATGAGATACTCGAACACAGACTTCCTCAATAAGGACATCGAAAATAGTTCCGGAGGTGGCACAATAACAGAATTGATAGTTTCAATCTTGAGTTCTGTTGTTGTTTTGATAATCGGAGTGGCGATCGGTACTTATGTCTGGAAGCGCAGATACGTACAAAAGAAAAGGAAAGGAGGTTCAACTGATGTGAAGAAGTTAGCAAAAACTCTTCAAGATAGTAACTTGAACTTCAAGTACTCAACCCTTGAAAAAGCTACCAACAATTTCAGCCTTGATAACAAGATTGGACAGGGGGGATTTGGCACTGTTTATAAGGGAACTCTACCTGATGGAAGAGAGATTGCTGTCAAGAGATTCTTCTTTGATAACAGACACAGAGCAGCCGATTTCTACAATGAAGTAAACATGATCAGCAGTGTCGAACATAAAAATCTGGTGAGGTTGCTTGGATGCAGTTGTTCTGGACCTGAAAGCCTACTTGTTTATGAATTTCTACCAAACAAGAGTCTGGATCGTTTCATTTTCGGTATCGATAACAGTAAAGCTCTTGATTGGGATAAGAGGTATAACATCATCATTGGAACGGTTGAAGGTTTAATATATCTACATGAAAATCCAAAGATCAAAATCATACATAGAGATATAAAGGCCAGTAATATCTTGCTGGATCTAAAGCTTCAAGCGAAAATAGCAGATTTTGGATTAGCAAGGTCTTTTCAAGAAAACAAGAGCCATATTAGCACCGCCATTGCAGGAACCCTAGGATATATGGCTCCAGAGTATCTAGCTTATGGTCAGTTAACAGAAAAGGCTGATGTCTATAGCTTTGGAGTGCTTTTGTTAGAAATTGTTACAGGAATCCAATATAGTGGCATTCAAGTCTCAGGAAACATTGAAAGTCTGATCACTGCTATGTGGAGACATTTCCAAGCAGGCACAATTGAGAGGCTATTTGATCCAAATCTTAATCTTCAGAATCACTACAACAAGAAAGTAAAGAACGAGGTATTGAGAGTGGTGCACATAGGACTCTTATGCATCCAGGAGATTCCATCTCTACGACCAACAATGTCGAAGGTACTACGAATGCTGACTATGGAGGAGGAAGAGCACCTTCCTCCACCCACCAAACCACCCTTCATGGATGAGATGACCATGGAACTAGATGACTCGTGCAAGGACTCACAATATTATCCTATTACAGAGGGCTCTTCTTCAACTGCCACAGTCAGCCATAGTTCTTTTGTTCCTAGATAA 1968 43.9 MAIQLVYASKYALFSVLAIPLLLGSFTMGKPRDQTVKVICGKELEHNTTAYVPNFFGSMEKVRQQIRTSGFGTAGTGIGPDASYGLAQCHEDLSSHECVLCHSQARTVLPQCFPFNGGRAFIDGCFMRFENYSFFDEYKGPEDTAICGNLTQNDPNYRQAARDAVMQVVNGAPASKGFAKARVAVGGMANESAAYALGQCWRSLNRSSCNSCLQIASASMLRCLPQSEGRALYTGCFMRYSNTDFLNKDIENSSGGGTITELIVSILSSVVVLIIGVAIGTYVWKRRYVQKKRKGGSTDVKKLAKTLQDSNLNFKYSTLEKATNNFSLDNKIGQGGFGTVYKGTLPDGREIAVKRFFFDNRHRAADFYNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFGIDNSKALDWDKRYNIIIGTVEGLIYLHENPKIKIIHRDIKASNILLDLKLQAKIADFGLARSFQENKSHISTAIAGTLGYMAPEYLAYGQLTEKADVYSFGVLLLEIVTGIQYSGIQVSGNIESLITAMWRHFQAGTIERLFDPNLNLQNHYNKKVKNEVLRVVHIGLLCIQEIPSLRPTMSKVLRMLTMEEEEHLPPPTKPPFMDEMTMELDDSCKDSQYYPITEGSSSTATVSHSSFVPR 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12965366 12967886 + Lag0005262.1 Lac6g1293 611062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1293 655 FunFam Cysteine-rich receptor-like protein kinase 2 402 609 - -
Lac6g1293 655 FunFam Putative DUF26-domain receptor-like protein kinase family protein 296 401 - -
Lac6g1293 655 FunFam Cysteine-rich receptor-like protein kinase 3 143 245 - -
Lac6g1293 655 ProSiteProfiles Gnk2-homologous domain profile. 139 245 IPR002902 -
Lac6g1293 655 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 181 633 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lac6g1293 655 ProSiteProfiles Protein kinase domain profile. 326 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1293 655 Pfam Protein kinase domain 327 599 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1293 655 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
Lac6g1293 655 Gene3D Transferase(Phosphotransferase) domain 1 402 610 - -
Lac6g1293 655 Pfam Salt stress response/antifungal 47 132 IPR002902 -
Lac6g1293 655 Pfam Salt stress response/antifungal 147 242 IPR002902 -
Lac6g1293 655 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Lac6g1293 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g1293 655 CDD STKc_IRAK 332 602 - -
Lac6g1293 655 SMART serkin_6 326 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1293 655 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524(InterPro)
Lac6g1293 655 Gene3D - 33 134 IPR038408 -
Lac6g1293 655 Gene3D - 144 245 IPR038408 -
Lac6g1293 655 SUPERFAMILY Protein kinase-like (PK-like) 310 622 IPR011009 -
Lac6g1293 655 Gene3D Phosphorylase Kinase; domain 1 286 401 - -
Lac6g1293 655 MobiDBLite consensus disorder prediction 635 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0181 Lac-Chr13:1270615 Lac6g1293 Lac-Chr6:12965366 9.90E-126 dispersed
Lac6g1293 Lac-Chr6:12965366 Lac8g0254 Lac-Chr8:2842891 7.90E-115 dispersed
Lac12g1448 Lac-Chr12:25993296 Lac6g1293 Lac-Chr6:12965366 2.60E-06 wgd
Lac12g1208 Lac-Chr12:16909198 Lac6g1293 Lac-Chr6:12965366 2.60E-22 wgd
Lac6g1291 Lac-Chr6:12958609 Lac6g1293 Lac-Chr6:12965366 9.30E-249 wgd
Lac6g1293 Lac-Chr6:12965366 Lac8g0237 Lac-Chr8:2622693 6.50E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86268 PF00069 Pkinase 1.50E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1293 - - - 0.0