Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1297 ATGGGAGACGCAGTTTATTTGAAGCTACATCCTTACCGCCAGCGTTCAGTTGCAACAAGAAGGTGTGAAAAGCTCTCTCCGAATTTTTTTGGCCCTTATCGAATCAGTGAACAAATTGGAGCAGTCGCCTATCGTCTGGAATTGCCACTTGAGGCTACCATTCACAATGTTTTCCACATCTCTCAATTGAAGAAAGCAGTGGGGGATTGGAACAATATACAGTCAAAAGGCGCCCAGTATAAACCGTACTGTGACGCAACTTGGGAGGATGCTGAGGTGATCAAACGAAAATTTCCCAATTTCCACCTCGAGGACAAGATGTCTCTTGAACCCGGGGGTATTGTGAGGCCCCCTATTATACACACTTACAGCCGAAGGGGTAAAAAGGGAATTGCCATGAAGGAGAAAGGACAGACAGGTGGATACCTTACAACTGCACTCTTAGATATTGCGTTAAAAGCAAGTGAATGGTGTGAAAACGGGGGTGGAACTATGACAGAAACTTGGGACTCTCATCTTTCAAGATCATTAACCAATAAGATATACCTTAAACAAATATTGTTTTGTGATGGATCCAATAGAAGCAGCTTGGAAGATAATGTTGATGAGTTCCACAATATCACATTGGATCTCATCTTGCAAATGCTGGAGAAAATTACCCTAGCGGACCAGCCATTTTATTGTCTCATGGGGGAGCCAGATATTTCTATAAATGTTCTTGCTTTCGATGTATGTCTGGCTGAAAATTCCCCTTTTGGTTGTGCATTCATTATTGTAGATGAGGACGCTATGTCATCAGATGATGAGCTTGATTGGGGAGAGAGGGAATTACAAGATGCTCAAATAAGGTTAGAAGACAAAGGTCTTAAAGATATACTCTTAAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGGAGGAAAGTACTGCTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCATTGGAAACCTTCTGAAAGTATGCAATTTGCAGCTATGGATAATGGGCCTGAACAATTTTACGGTAGGCTTGACTCTTGA 1182 41.88 MGDAVYLKLHPYRQRSVATRRCEKLSPNFFGPYRISEQIGAVAYRLELPLEATIHNVFHISQLKKAVGDWNNIQSKGAQYKPYCDATWEDAEVIKRKFPNFHLEDKMSLEPGGIVRPPIIHTYSRRGKKGIAMKEKGQTGGYLTTALLDIALKASEWCENGGGTMTETWDSHLSRSLTNKIYLKQILFCDGSNRSSLEDNVDEFHNITLDLILQMLEKITLADQPFYCLMGEPDISINVLAFDVCLAENSPFGCAFIIVDEDAMSSDDELDWGERELQDAQIRLEDKGLKDILLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKIALAETTGLDPKQINNWFINQRKRHWKPSESMQFAAMDNGPEQFYGRLDS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13038368 13041467 - Lag0005266.1 Lac6g1297 611066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1297 393 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 277 381 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac6g1297 393 Pfam ELK domain 289 309 IPR005539 GO:0003677(InterPro)
Lac6g1297 393 SMART HOX_1 310 375 IPR001356 GO:0003677(InterPro)
Lac6g1297 393 SUPERFAMILY Homeodomain-like 309 381 IPR009057 -
Lac6g1297 393 ProSiteProfiles 'Homeobox' domain profile. 308 371 IPR001356 GO:0003677(InterPro)
Lac6g1297 393 Gene3D - 307 380 - -
Lac6g1297 393 CDD homeodomain 322 372 IPR001356 GO:0003677(InterPro)
Lac6g1297 393 ProSitePatterns 'Homeobox' domain signature. 346 369 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac6g1297 393 Pfam Homeobox KN domain 328 367 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0436 Lac-Chr2:3206245 Lac6g1297 Lac-Chr6:13038368 1.80E-39 dispersed
Lac5g1556 Lac-Chr5:31406111 Lac6g1297 Lac-Chr6:13038368 4.10E-17 dispersed
Lac6g1297 Lac-Chr6:13038368 Lac6g2534 Lac-Chr6:43116099 7.00E-34 dispersed
Lac1g0108 Lac-Chr1:1960720 Lac6g1297 Lac-Chr6:13038368 1.20E-27 wgd
Lac13g0182 Lac-Chr13:1274954 Lac6g1297 Lac-Chr6:13038368 2.50E-30 wgd
Lac4g0241 Lac-Chr4:5085992 Lac6g1297 Lac-Chr6:13038368 3.60E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24041 PF05920 Homeobox_KN 5.60E-17 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1297 - - - 0.0