Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1302 ATGGAAGGGCCTTTTGTGTTCTGGACAGCGGTTTTTGTAGTTTTTGCATTCCTGGAAGTTGCTTCTTCTACGCTGTCTCCGTCTGGTGTAAACTACGAAGTTGTAGCTTTGATGGCCATTAAAAATGATTTAATAGATCCCCACAATGTTTTGGAGAATTGGGATTCTAACTCTGTGGATCCCTGTAGCTGGAGAATGGTCACTTGTTCTCCAGATGGATATGTTTCTGCTTTGGGGCTACCAAGCCAGAGTTTGTCTGGGGTCTTATCTCCGGGGATTGGAAACCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCGGGGCCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAATGTATTTAGTGGTGAAATACCCAGTTCACTAGGGGACTTGAAGAAGCTGAACTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCTGAGTCTCTATCCAAAGTTGAAGGTCTCACACTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGCAACCCTTTGATCTGTGGCCCAAACAACTGTTCTGCCATCTTGCCAGAGCCGCTGTCCTTTGCCCCAGATGCTCTCGAAGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTAGTCTACTTGTCTGGTGGAGATACAGACACAATCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAAGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACACAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTGAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACCGCTGGTGGGGAGATACAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACATCGAAATCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAGAGACTTCTGGTTTACCCATTCATGCCCAATGGAAGCGTTGCATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGTACAGCTAGAGGATTGGTGTACTTACATGAGCAGTGTGACCCCAAAATAATCCACCGTGATGTAAAGGCAGCCAACATTCTCCTTGATGAAGACTTTGAAGCCGTCGTTGGAGACTTCGGGTTGGCAAAACTTTTGGATCACAGGGATTCTCATGTGACCACAGCGGTGCGTGGCACTGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCGTCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTCTTGGAGTTGATTACTGGTCAGAAGGCTCTGGATTTTGGCCGAGGAGCAAACCAGAAAGGCGTGATGCTCGACTGGGTGAAGAAGTTGCATCAGGAAGGAAAGCTGAATCTGATGGTAGATAAGGATCTAAGAGGTAACTTCGACAGAGTTGAGTTAGAGGAAATAGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACAGACCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCACAGCACATGGAGACGCCGAGATACCGAGCAGTGGAGAATCCCCCTCAACGGTACTCAGATTATATAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1866 44.8 MEGPFVFWTAVFVVFAFLEVASSTLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGEIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSAILPEPLSFAPDALEGNLGFGKSHRKAIAFGASFSAAFIVLVLISLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNTKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNLMVDKDLRGNFDRVELEEIVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHMETPRYRAVENPPQRYSDYIEESSLIVEAMELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13140525 13143935 - Lag0005271.1 Lac6g1302 611071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1302 621 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Lac6g1302 621 FunFam Somatic embryogenesis receptor-like kinase 1 375 591 - -
Lac6g1302 621 Pfam Protein tyrosine and serine/threonine kinase 300 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g1302 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Lac6g1302 621 SMART serkin_6 298 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1302 621 SUPERFAMILY L domain-like 31 192 - -
Lac6g1302 621 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Lac6g1302 621 SUPERFAMILY Protein kinase-like (PK-like) 282 579 IPR011009 -
Lac6g1302 621 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
Lac6g1302 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 621 - -
Lac6g1302 621 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 210 - -
Lac6g1302 621 Gene3D Transferase(Phosphotransferase) domain 1 375 591 - -
Lac6g1302 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
Lac6g1302 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Lac6g1302 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g1302 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0429 Lac-Chr13:3016255 Lac6g1302 Lac-Chr6:13140525 2.00E-192 dispersed
Lac1g3423 Lac-Chr1:53708314 Lac6g1302 Lac-Chr6:13140525 4.70E-158 dispersed
Lac2g2300 Lac-Chr2:31343464 Lac6g1302 Lac-Chr6:13140525 2.70E-144 dispersed
Lac5g2713 Lac-Chr5:45595236 Lac6g1302 Lac-Chr6:13140525 4.50E-136 dispersed
Lac6g1302 Lac-Chr6:13140525 Lac8g2791 Lac-Chr8:45141079 7.60E-192 dispersed
Lac4g0504 Lac-Chr4:11664690 Lac6g1302 Lac-Chr6:13140525 6.50E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86269 PF00069 Pkinase 2.60E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1302 - - - 0.0