Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g1302 | ATGGAAGGGCCTTTTGTGTTCTGGACAGCGGTTTTTGTAGTTTTTGCATTCCTGGAAGTTGCTTCTTCTACGCTGTCTCCGTCTGGTGTAAACTACGAAGTTGTAGCTTTGATGGCCATTAAAAATGATTTAATAGATCCCCACAATGTTTTGGAGAATTGGGATTCTAACTCTGTGGATCCCTGTAGCTGGAGAATGGTCACTTGTTCTCCAGATGGATATGTTTCTGCTTTGGGGCTACCAAGCCAGAGTTTGTCTGGGGTCTTATCTCCGGGGATTGGAAACCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCGGGGCCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAATGTATTTAGTGGTGAAATACCCAGTTCACTAGGGGACTTGAAGAAGCTGAACTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCTGAGTCTCTATCCAAAGTTGAAGGTCTCACACTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTGTTGGCAACCCTTTGATCTGTGGCCCAAACAACTGTTCTGCCATCTTGCCAGAGCCGCTGTCCTTTGCCCCAGATGCTCTCGAAGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTAGTCTACTTGTCTGGTGGAGATACAGACACAATCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAAGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACACAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTGAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACCGCTGGTGGGGAGATACAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACATCGAAATCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAGAGACTTCTGGTTTACCCATTCATGCCCAATGGAAGCGTTGCATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCTTGGGTACAGCTAGAGGATTGGTGTACTTACATGAGCAGTGTGACCCCAAAATAATCCACCGTGATGTAAAGGCAGCCAACATTCTCCTTGATGAAGACTTTGAAGCCGTCGTTGGAGACTTCGGGTTGGCAAAACTTTTGGATCACAGGGATTCTCATGTGACCACAGCGGTGCGTGGCACTGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCGTCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTCTTGGAGTTGATTACTGGTCAGAAGGCTCTGGATTTTGGCCGAGGAGCAAACCAGAAAGGCGTGATGCTCGACTGGGTGAAGAAGTTGCATCAGGAAGGAAAGCTGAATCTGATGGTAGATAAGGATCTAAGAGGTAACTTCGACAGAGTTGAGTTAGAGGAAATAGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACAGACCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCACAGCACATGGAGACGCCGAGATACCGAGCAGTGGAGAATCCCCCTCAACGGTACTCAGATTATATAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGCCCCAGATGA | 1866 | 44.8 | MEGPFVFWTAVFVVFAFLEVASSTLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGEIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPNNCSAILPEPLSFAPDALEGNLGFGKSHRKAIAFGASFSAAFIVLVLISLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNTKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNLMVDKDLRGNFDRVELEEIVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHMETPRYRAVENPPQRYSDYIEESSLIVEAMELSGPR | 621 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 13140525 | 13143935 | - | Lag0005271.1 | Lac6g1302 | 611071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g1302 | 621 | Gene3D | Ribonuclease Inhibitor | 30 | 209 | IPR032675 | - | |
Lac6g1302 | 621 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 375 | 591 | - | - | |
Lac6g1302 | 621 | Pfam | Protein tyrosine and serine/threonine kinase | 300 | 571 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac6g1302 | 621 | Pfam | Leucine rich repeat N-terminal domain | 31 | 70 | IPR013210 | - | |
Lac6g1302 | 621 | SMART | serkin_6 | 298 | 571 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g1302 | 621 | SUPERFAMILY | L domain-like | 31 | 192 | - | - | |
Lac6g1302 | 621 | Pfam | Leucine rich repeat | 98 | 157 | IPR001611 | GO:0005515(InterPro) | |
Lac6g1302 | 621 | SUPERFAMILY | Protein kinase-like (PK-like) | 282 | 579 | IPR011009 | - | |
Lac6g1302 | 621 | FunFam | Somatic embryogenesis receptor kinase 1 | 267 | 374 | - | - | |
Lac6g1302 | 621 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 10 | 621 | - | - | |
Lac6g1302 | 621 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 30 | 210 | - | - | |
Lac6g1302 | 621 | Gene3D | Transferase(Phosphotransferase) domain 1 | 375 | 591 | - | - | |
Lac6g1302 | 621 | ProSitePatterns | Protein kinases ATP-binding region signature. | 304 | 326 | IPR017441 | GO:0005524(InterPro) | |
Lac6g1302 | 621 | Gene3D | Phosphorylase Kinase; domain 1 | 267 | 374 | - | - | |
Lac6g1302 | 621 | ProSiteProfiles | Protein kinase domain profile. | 298 | 581 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac6g1302 | 621 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 421 | 433 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0429 | Lac-Chr13:3016255 | Lac6g1302 | Lac-Chr6:13140525 | 2.00E-192 | dispersed | |
Lac1g3423 | Lac-Chr1:53708314 | Lac6g1302 | Lac-Chr6:13140525 | 4.70E-158 | dispersed | |
Lac2g2300 | Lac-Chr2:31343464 | Lac6g1302 | Lac-Chr6:13140525 | 2.70E-144 | dispersed | |
Lac5g2713 | Lac-Chr5:45595236 | Lac6g1302 | Lac-Chr6:13140525 | 4.50E-136 | dispersed | |
Lac6g1302 | Lac-Chr6:13140525 | Lac8g2791 | Lac-Chr8:45141079 | 7.60E-192 | dispersed | |
Lac4g0504 | Lac-Chr4:11664690 | Lac6g1302 | Lac-Chr6:13140525 | 6.50E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86269 | PF00069 | Pkinase | 2.60E-44 | CL0016 | Lac | PK |
Pathway information
