Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1384 ATGGCGGCTCGGAGGATATCTTCGCTCTTATCTCGTTCCCTTGCTTCTTCACCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTCCGGTGGCAGAGCAACCGGCAAATACAGCACTGCGGCTGCTGTTGAAGACCCGATTGCTCCATCTGTGAAAGTAAATTACACGCAGCTGTTAATCAACGGACAGTTTGTGGATTCGGCCTCAGGAAAAACTTTTCCTACACTGGACCCAAGGACTGGGGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAGAGATGTTGATCTTGCAGTTTCAGCTGCACGCAAGGCGTTTGATGAAGGGCCTTGGCCTAAGATGACTGCCTATGAAAGATCAAAGATAATGTTGCGATTTGCTGATTTGGTTGAAAAGCATGCCGATGAAGTAGCAGCACTAGAAACTTGGGACAATGGGAAAACATACGAACAGTCAGCCAAACTGGAAGTCCCAATGTTTGTGCGCCTCTTTCGATACTATGCCGGATGGGCCGACAAGATTCACGGACTCACAGTTCCAGCTGATGGCTCGTATCATGTACAGACCTTGCACGAACCAATTGGCGTTGCGGGGCAGATTATTCCATGGAACTTTCCTCTGCTCATGTTTGCCTGGAAGGTTGGCCCAGCTTTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTCTCTATGTGGCTAAGCTATTCCATGAGGCTGGACTTCCTGAGGGCGTTCTGAATATTGTTTCCGGTTATGGACCCACTGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCCACCGAAACAGGGAAGATTGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTAACGTTGGAGCTTGGTGGAAAATCTCCTTTCATTGTATGCGAGGATGCTGATGTGGACAAGGCTGTCGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGCTGCTGTGCTGGTTCTCGTACTTTTGTTCATGAAAGAGTATATGACGAGTTTCTAGAGAAGGCAAGGAAACGAGCTGCGAACCGCGTTGTTGGTGATCCATTCCTAGGTGGAATCGAGCAAGGTCCTCAGGTGGATGGCGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGGATTGAAGGTGGAGCAACTCTTGAAGCTGGAGGAGAGAGGTTTGGTTCCAAGGGTTACTATATCCAGCCAACAGTTTTCTCGAACGTCAAGGATGACATGAAAATTGCAGAGGAGGAGATTTTTGGTCCTGTACAGACCATCTTGAAATTCAAAGATATCGAGGAGGTGATAAGGAGGGCAAATGGTAGTCGCTATGGGCTGGCCGCTGGGGTGTTTACTCAACAAATCGACACAGCCAACAGGCTGACACGTGCGCTGAGAGTTGGGTCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAATTCCTTTTGGTGGGTACAAGATGAGCGGACATGGGCGAGAGAAGGGCATTTACAGCCTCAGCAATTACCTGCAAGTGAAGGCTGTTGTCACTCCTCTAGAAAACCCTGCTTGGCTTTAG 1608 47.95 MAARRISSLLSRSLASSPALLSKGRRPSGGRATGKYSTAAAVEDPIAPSVKVNYTQLLINGQFVDSASGKTFPTLDPRTGEVIANVAEGDARDVDLAVSAARKAFDEGPWPKMTAYERSKIMLRFADLVEKHADEVAALETWDNGKTYEQSAKLEVPMFVRLFRYYAGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLFHEAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHERVYDEFLEKARKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYIQPTVFSNVKDDMKIAEEEIFGPVQTILKFKDIEEVIRRANGSRYGLAAGVFTQQIDTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14939258 14942408 - Lag0005353.1 Lac6g1384 611153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1384 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491(InterPro)
Lac6g1384 535 FunFam Aldehyde dehydrogenase, putative 497 523 - -
Lac6g1384 535 FunFam Mitochondrial aldehyde dehydrogenase 2 307 496 - -
Lac6g1384 535 SUPERFAMILY ALDH-like 52 529 IPR016161 GO:0016491(InterPro)
Lac6g1384 535 CDD ALDH_F2BC 52 527 - -
Lac6g1384 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 523 IPR016162 GO:0016491(InterPro)
Lac6g1384 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 50 527 - GO:0004029(PANTHER)
Lac6g1384 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491(InterPro)
Lac6g1384 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491(InterPro)
Lac6g1384 535 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 59 331 - -
Lac6g1384 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2767 Lac-Chr1:48807735 Lac6g1384 Lac-Chr6:14939258 4.60E-23 dispersed
Lac3g0696 Lac-Chr3:5397220 Lac6g1384 Lac-Chr6:14939258 7.80E-257 dispersed
Lac3g0889 Lac-Chr3:7183118 Lac6g1384 Lac-Chr6:14939258 3.20E-164 dispersed
Lac6g1384 Lac-Chr6:14939258 Lac9g2296 Lac-Chr9:42287797 5.70E-79 dispersed
Lac6g1384 Lac-Chr6:14939258 Lac11g0932 Lac-Chr11:10144511 1.90E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1384 K00128 - csv:101202756 979.548