Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1578 ATGGAAATGGAGCGTGGAGGTGTTGTGGGGAAAGGCATGGAAGATGTAGAAGACTCTGGTTCGTACAGAAAAATTATAATTGTTTCAGCAATTGCAGCTGGAATCCAATTTGGTTGGGCTCTTCAACTTTCATTGTTGACGCCTTACATACAACAACTTGGGGTCCCACATACATGGTCATCTTTCATATGGCTTTGTGGCCCATTATCAGGGCTTATTGTGCAGCCGATTGTTGGGTACTACAGCGATCGCTGCACTTCTAGGTTTGGTCGTCGTCGGCCCTTCATCATTTCCGGGGCTGGCTTTGTGGCGATTGCAGTTTTCCTCATTGGGTTCGCTGCAGATATTGGGCATGCTGCGGGAGATGAGATCTCGAGCCCCACAAAACCAAGGGCTGTGGCCATATTTGTGGTTGGATTTTGGGTTCTTGATGTGGCCAACAACATGTTGCAAGGTCCTTGCAGAGCTCTGTTGGCAGATATATCATATAACAACCACAAAAAGATGAGACTGGCGAATGGATTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGGTATGCATCGGGGGCCAACAGCACACTCTATAAGGCCCTTCCCTTCACAGTCACTAAAGCATGTGGCCCATACTGCGCCAACCTCAAAACATGTTTCTTAATCGACATTGTGCTACTCGTCGTGATCACCACATTCGCGATGTTGATGGTTAGAGAGAAGCCATATGAGCAGATGGAGATTGACGATGAATCCACACCCTTCTTCAGGCAGTTGCTAGGAGCACTGAAGCAGCTGTCAAAGCCCATGTGGATCTTGCTACTTGTAACGGCCTTGAATTGGATCGGTTGGTTCCCATTTATAATGTACGACACTGACTGGATGGGTGCAGAAGTGTATGGTGGAAAGCCGAGTGGGACCCCAGAAGAAGTGAGGTTCTATGACCTCGGTGTTCGTGCTGGAGCACTTGGGCTGATGATAAACTCGTTTGTTCTTGGATTTTATGCGTTGATGATAGAGCCAACAAGACGTATTCTAGGAGGTCTAAGGTTTGTGTGGGCAGTTGTAAACATAATATTTACAATTTGCATGGGATCCATGGTGGTGGTTACAAAGGTTGCCCAGCATTGGAGGTCCATTAATGGCTTGAAATTTCCACCCACCAATGTAAGGGCTGGAGCATTTACAATCTTTGCAATCTTGGGTATTCCACTCTCGGTCACTTATAGTGTCCCCTTTGCCCTTGCATCCATCTTTTCCTCAACCTCCGAGGCGGGTCAAGGGCTATCCTTGGGAATTCTCAACATCTTCATTGTCATCCCTCAATTCATCGTCTCCTCTATTAGTGGGCCCTTAGATGCAGCTTTTGGAGGAGGTAACTTACCCGCCTTTGTAATGGGTGGAATTGCCGCTTTTGCCAGCGCTCTTTGCGCCATCTTCCTACTCCCCGATCCACCACCTCAATCCAATCTCCCCTTAACAATGCCTGCTGGCCATTGA 1497 47.7 MEMERGGVVGKGMEDVEDSGSYRKIIIVSAIAAGIQFGWALQLSLLTPYIQQLGVPHTWSSFIWLCGPLSGLIVQPIVGYYSDRCTSRFGRRRPFIISGAGFVAIAVFLIGFAADIGHAAGDEISSPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADISYNNHKKMRLANGFFSFFMGVGNVLGYASGANSTLYKALPFTVTKACGPYCANLKTCFLIDIVLLVVITTFAMLMVREKPYEQMEIDDESTPFFRQLLGALKQLSKPMWILLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPSGTPEEVRFYDLGVRAGALGLMINSFVLGFYALMIEPTRRILGGLRFVWAVVNIIFTICMGSMVVVTKVAQHWRSINGLKFPPTNVRAGAFTIFAILGIPLSVTYSVPFALASIFSSTSEAGQGLSLGILNIFIVIPQFIVSSISGPLDAAFGGGNLPAFVMGGIAAFASALCAIFLLPDPPPQSNLPLTMPAGH 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21512156 21513755 - Lag0005547.1 Lac6g1578 611347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1578 498 NCBIfam sucrose/proton symporter 22 485 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Lac6g1578 498 CDD MFS_SLC45_SUC 25 479 - -
Lac6g1578 498 PANTHER SUGAR TRANSPORTER 19 479 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Lac6g1578 498 Gene3D MFS general substrate transporter like domains 18 489 IPR036259 -
Lac6g1578 498 Pfam MFS/sugar transport protein 37 282 - -
Lac6g1578 498 FunFam Sucrose transporter SUC2 23 244 - -
Lac6g1578 498 SUPERFAMILY MFS general substrate transporter 23 486 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1578 K15378 - - csv:116401998 833.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1046 Lac-Chr6:9589523 Lac6g1578 Lac-Chr6:21512156 3.30E-120 dispersed
Lac6g1476 Lac-Chr6:17833439 Lac6g1578 Lac-Chr6:21512156 3.80E-119 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g1578 . 23 487 Sucrose Transporter Gene Family AT1G22710 61.7 1.0e-173 607.4
Lac6g1046 . 28 455 Sucrose Transporter Gene Family AT1G22710 50.5 7.3e-124 441.8
Lac6g1578 . 13 482 Sucrose Transporter Gene Family AT2G14670 60.6 6.1e-168 588.2
Lac6g1046 . 27 455 Sucrose Transporter Gene Family AT2G14670 50.7 5.0e-122 435.6
Lac6g1578 . 15 412 Sucrose Transporter Gene Family AT1G66570 58.5 6.5e-140 495.0
Lac6g1476 . 152 553 Sucrose Transporter Gene Family AT2G02860 68.7 4.8e-175 611.7
Lac6g1578 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.0 2.8e-157 552.7
Lac6g1578 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.4 9.7e-166 580.9
Lac6g1046 . 27 451 Sucrose Transporter Gene Family AT5G43610 50.2 2.3e-119 426.8
Lac6g1046 . 1 451 Sucrose Transporter Gene Family AT1G09960 69.2 4.1e-183 638.6
Lac6g1578 . 21 492 Sucrose Transporter Gene Family AT1G09960 52.0 9.2e-135 478.0
Lac6g1578 . 14 498 Sucrose Transporter Gene Family AT1G71880 57.3 3.6e-163 572.4
Lac6g1046 . 27 451 Sucrose Transporter Gene Family AT1G71880 51.4 7.1e-119 425.2
Lac6g1578 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.2 6.8e-162 568.2
Lac6g1578 . 14 498 Sucrose Transporter Gene Family AT1G71880 57.3 3.6e-163 572.4
Lac6g1046 . 27 451 Sucrose Transporter Gene Family AT1G71880 51.4 7.1e-119 425.2
Lac6g1578 . 23 487 Sucrose Transporter Gene Family AT1G22710 61.7 1.0e-173 607.4
Lac6g1046 . 28 455 Sucrose Transporter Gene Family AT1G22710 50.5 7.3e-124 441.8
Lac6g1476 . 152 553 Sucrose Transporter Gene Family AT2G02860 68.7 4.8e-175 611.7
Lac6g1046 . 1 451 Sucrose Transporter Gene Family AT1G09960 69.2 4.1e-183 638.6
Lac6g1578 . 21 492 Sucrose Transporter Gene Family AT1G09960 52.0 9.2e-135 478.0
Lac6g1578 . 14 487 Sucrose Transporter Gene Family AT1G71890 58.2 6.8e-162 568.2
Lac6g1578 . 15 482 Sucrose Transporter Gene Family AT5G43610 60.4 9.7e-166 580.9
Lac6g1046 . 27 451 Sucrose Transporter Gene Family AT5G43610 50.2 2.3e-119 426.8
Lac6g1578 . 15 412 Sucrose Transporter Gene Family AT1G66570 58.5 6.5e-140 495.0
Lac6g1578 . 13 482 Sucrose Transporter Gene Family AT2G14670 60.6 6.1e-168 588.2
Lac6g1046 . 27 455 Sucrose Transporter Gene Family AT2G14670 50.7 5.0e-122 435.6
Lac6g1578 . 17 482 Sucrose Transporter Gene Family AT5G06170 59.0 2.8e-157 552.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60