Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1578 ATGGAAATGGAGCGTGGAGGTGTTGTGGGGAAAGGCATGGAAGATGTAGAAGACTCTGGTTCGTACAGAAAAATTATAATTGTTTCAGCAATTGCAGCTGGAATCCAATTTGGTTGGGCTCTTCAACTTTCATTGTTGACGCCTTACATACAACAACTTGGGGTCCCACATACATGGTCATCTTTCATATGGCTTTGTGGCCCATTATCAGGGCTTATTGTGCAGCCGATTGTTGGGTACTACAGCGATCGCTGCACTTCTAGGTTTGGTCGTCGTCGGCCCTTCATCATTTCCGGGGCTGGCTTTGTGGCGATTGCAGTTTTCCTCATTGGGTTCGCTGCAGATATTGGGCATGCTGCGGGAGATGAGATCTCGAGCCCCACAAAACCAAGGGCTGTGGCCATATTTGTGGTTGGATTTTGGGTTCTTGATGTGGCCAACAACATGTTGCAAGGTCCTTGCAGAGCTCTGTTGGCAGATATATCATATAACAACCACAAAAAGATGAGACTGGCGAATGGATTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGGTATGCATCGGGGGCCAACAGCACACTCTATAAGGCCCTTCCCTTCACAGTCACTAAAGCATGTGGCCCATACTGCGCCAACCTCAAAACATGTTTCTTAATCGACATTGTGCTACTCGTCGTGATCACCACATTCGCGATGTTGATGGTTAGAGAGAAGCCATATGAGCAGATGGAGATTGACGATGAATCCACACCCTTCTTCAGGCAGTTGCTAGGAGCACTGAAGCAGCTGTCAAAGCCCATGTGGATCTTGCTACTTGTAACGGCCTTGAATTGGATCGGTTGGTTCCCATTTATAATGTACGACACTGACTGGATGGGTGCAGAAGTGTATGGTGGAAAGCCGAGTGGGACCCCAGAAGAAGTGAGGTTCTATGACCTCGGTGTTCGTGCTGGAGCACTTGGGCTGATGATAAACTCGTTTGTTCTTGGATTTTATGCGTTGATGATAGAGCCAACAAGACGTATTCTAGGAGGTCTAAGGTTTGTGTGGGCAGTTGTAAACATAATATTTACAATTTGCATGGGATCCATGGTGGTGGTTACAAAGGTTGCCCAGCATTGGAGGTCCATTAATGGCTTGAAATTTCCACCCACCAATGTAAGGGCTGGAGCATTTACAATCTTTGCAATCTTGGGTATTCCACTCTCGGTCACTTATAGTGTCCCCTTTGCCCTTGCATCCATCTTTTCCTCAACCTCCGAGGCGGGTCAAGGGCTATCCTTGGGAATTCTCAACATCTTCATTGTCATCCCTCAATTCATCGTCTCCTCTATTAGTGGGCCCTTAGATGCAGCTTTTGGAGGAGGTAACTTACCCGCCTTTGTAATGGGTGGAATTGCCGCTTTTGCCAGCGCTCTTTGCGCCATCTTCCTACTCCCCGATCCACCACCTCAATCCAATCTCCCCTTAACAATGCCTGCTGGCCATTGA 1497 47.7 MEMERGGVVGKGMEDVEDSGSYRKIIIVSAIAAGIQFGWALQLSLLTPYIQQLGVPHTWSSFIWLCGPLSGLIVQPIVGYYSDRCTSRFGRRRPFIISGAGFVAIAVFLIGFAADIGHAAGDEISSPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADISYNNHKKMRLANGFFSFFMGVGNVLGYASGANSTLYKALPFTVTKACGPYCANLKTCFLIDIVLLVVITTFAMLMVREKPYEQMEIDDESTPFFRQLLGALKQLSKPMWILLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPSGTPEEVRFYDLGVRAGALGLMINSFVLGFYALMIEPTRRILGGLRFVWAVVNIIFTICMGSMVVVTKVAQHWRSINGLKFPPTNVRAGAFTIFAILGIPLSVTYSVPFALASIFSSTSEAGQGLSLGILNIFIVIPQFIVSSISGPLDAAFGGGNLPAFVMGGIAAFASALCAIFLLPDPPPQSNLPLTMPAGH 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21512156 21513755 - Lag0005547.1 Lac6g1578 611347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1578 498 NCBIfam sucrose/proton symporter 22 485 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Lac6g1578 498 CDD MFS_SLC45_SUC 25 479 - -
Lac6g1578 498 PANTHER SUGAR TRANSPORTER 19 479 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Lac6g1578 498 Gene3D MFS general substrate transporter like domains 18 489 IPR036259 -
Lac6g1578 498 Pfam MFS/sugar transport protein 37 282 - -
Lac6g1578 498 FunFam Sucrose transporter SUC2 23 244 - -
Lac6g1578 498 SUPERFAMILY MFS general substrate transporter 23 486 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1046 Lac-Chr6:9589523 Lac6g1578 Lac-Chr6:21512156 3.30E-120 dispersed
Lac6g1476 Lac-Chr6:17833439 Lac6g1578 Lac-Chr6:21512156 3.80E-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1578 K15378 - csv:116401998 833.172