Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1639 ATGGAGTTTCAAGTGCTCTTTTTGGTGTCCTTTCTGTCACTCTTCTCCTCTGCCGCCGCATGGATTAATGCTCACGCTACCTTCTACGGCGGCAGTGATGCTGCTGGGACAATGGGTGGGGCTTGTGGGTATGGGAATCTTTACAGTCAAGGGTACGGGACCAACACTGCGGCTGTTAGCACTGCCCTCTTCAACAATGGGCTGAGCTGTGGGTCTTGCTATGAGATCAAGTGTGTGGGTGACCCCAAATGGTGCCTTCCGGGCTCCATTTTGGTCACTGCTACCAACTTCTGTCCGCCCAATAACGCCCTTCCCAACACCGCCGGCGGCTGGTGCAACCCTCCTCTCCACCATTTTGACCTCTCCCAGCCGGTCTTCCTCCACATTGCCCAATACCATGCGGGCATCGTCCCCGTTGCTTACCGGAGGGCTCCGTGCAGGAGGAAGGGAGGAATAAGGTTCACAATCAACGGGCATTCCTACTTCAACTTAGTTCTGATTACGAACGTGGGGGGCGCCGGAGATGTGCGAGCAGTGTCCGTGAAAGGGTCGAGAAGTGGTTGGCAATCGATGTCAAGAAACTGGGGACAGAACTGGCAGAGCAACAACTATTTGGATGGGCAAGCCCTCTCTTTCAAGGTCACCACCAGCGACGGCCGTACACTCGTTTCCAACAACGTCGCTCCCGCCGGTTGGGCCTTCGGCCAGACCTTCACCGGCGCCCAATTCCGGTGA 735 56.33 MEFQVLFLVSFLSLFSSAAAWINAHATFYGGSDAAGTMGGACGYGNLYSQGYGTNTAAVSTALFNNGLSCGSCYEIKCVGDPKWCLPGSILVTATNFCPPNNALPNTAGGWCNPPLHHFDLSQPVFLHIAQYHAGIVPVAYRRAPCRRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSVKGSRSGWQSMSRNWGQNWQSNNYLDGQALSFKVTTSDGRTLVSNNVAPAGWAFGQTFTGAQFR 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23683462 23684362 + Lag0005608.1 Lac6g1639 611408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1639 244 SMART dpbb_1 56 141 IPR007112 -
Lac6g1639 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 151 IPR007112 -
Lac6g1639 244 FunFam Expansin 12 147 - -
Lac6g1639 244 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
Lac6g1639 244 SUPERFAMILY Barwin-like endoglucanases 12 169 IPR036908 -
Lac6g1639 244 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lac6g1639 244 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576(InterPro)
Lac6g1639 244 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lac6g1639 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Lac6g1639 244 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576(InterPro)
Lac6g1639 244 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576(InterPro)
Lac6g1639 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Lac6g1639 244 Gene3D - 11 147 IPR036908 -
Lac6g1639 244 PRINTS Expansin signature 150 162 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 PRINTS Expansin signature 51 65 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 PRINTS Expansin signature 162 183 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 PRINTS Expansin signature 126 139 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 PRINTS Expansin signature 226 242 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 PRINTS Expansin signature 90 100 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 PRINTS Expansin signature 78 89 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 PRINTS Expansin signature 109 126 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 PRINTS Expansin signature 197 218 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 Gene3D - 151 243 IPR036749 -
Lac6g1639 244 Pfam Lytic transglycolase 56 141 IPR009009 -
Lac6g1639 244 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Lac6g1639 244 CDD DPBB_EXPA_N 21 146 - -
Lac6g1639 244 PANTHER EXPANSIN-A15 5 243 IPR002963 GO:0009664(InterPro)
Lac6g1639 244 FunFam Expansin 151 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0088 Lac-Chr10:679323 Lac6g1639 Lac-Chr6:23683462 1.20E-95 dispersed
Lac3g0609 Lac-Chr3:4734490 Lac6g1639 Lac-Chr6:23683462 4.80E-113 dispersed
Lac6g1639 Lac-Chr6:23683462 Lac8g2843 Lac-Chr8:45632129 3.50E-108 dispersed
Lac6g1639 Lac-Chr6:23683462 Lac13g0330 Lac-Chr13:2362861 3.30E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1639 - - - 0.0