Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1670 ATGATTGAATGGGTTGATTCCTTGCATAGAGAGTTAGCCAATAGTAACTATTTGAGCTCAATGTTGATGAGCCATATTAGGAGGGGGCATGGCCATGAGAGTGAGAGGTCTCAAATCGCCACTATCGGAGACCAGGCCAAGGTAGATCTGCGCTTTTATCCACATCCTCTTTTCGATTGTCCTTTTGCGATTAAAGCAAAAAAACAACCACCAAAAGGCTCAAGAGCTATTGTGTTGAGAATCCGTGGGATTGGACTGTCCCGACAGGGAAGGGGCAGAAGAAGAGGGTTCCTGACGGATCGGTACAGAGAAAGTGGTGGGAGTTGGGGGTTGAATAAGGCAGTTGGCCTGGAGTGCATTCTAAGCATTGTTAGGGCACTTCGGATGGGGTCCTGCTTGTCTGCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACCTCTCCGGCTAAGCACCATCGAAGCAGGAACAAGAGGCGATATGGTTCTCGGAATTCCTCCTTTGGGGATCTGTCTCTCCATCGGATCCCCGGCAGGCTCTTCGCCAATGGCTTCACCGACGTTGCCTCTCTCTTCACTCAGCAGGGCAAGAAAGGGACCAATCAGGACGCCATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTCGATGGCCACGGCCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTAAACTTGACCACGGATGATGTTCTTAGAGAGATCAGCCTTAATACAGGAAGTATGAACTCGGATGATGCTACCTCCTTTTTATCTGCTGATGAAGAGTTTAGGGCATCCACTGATGTTGATGGAACAGAAAAGCAACCTGAAATTTTCCATACTTTGAAGGAGTCGTTTCTTAAGGCTTTTAGAGTTATGGACAGAGAGCTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTTTGGTTAAACAGGGTCAGGATCTTGTCATTGGAAACATTGGGGACTCCCGAGCTGTTATGGGTACGAGAGATAAAGATGACTCTCTTGTTGCAATTCAATTGACTGTAGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAAAGGTCGTGTCTTTGCTCTCCAAGACGAACCTGATGTTGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGACTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCTGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTGCTGTCAAACAAAGAGGTCGTAGATATTGTTGCATCAGCTCCAAAACGTACTACTGCAGCTCGAACTCTAGTCGAGACAGCCATTAAAGCATGGAGACATAAATACCCAACCTCCAAGATTGATGACTGTGCGGTCGTCTGCCTCTTCCTCGACGCAAACTCCAGCAATCTATCATCTGCTTCCAATAGCAAACCAGAAGAGCATCAAGGTTTAGGAGATCAAGTCAGCAATGCAGTTGAGAATGAAAACCTATCTGGGCCAAATGGTCTGAATCGTTCGGGAACCGTCCGAAGCAGCAAGGAAATTTTGCAGGATGGAAGCGATGAAGAAGATGAATCAAAGGAGGAAGAACAGTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCACGCGTAAACACTTTGGTAAACCTGCCAAGATTTGATCCTGGAAAAGAAGATAAGAAAGGGCGTAAGTAG 1833 46.92 MIEWVDSLHRELANSNYLSSMLMSHIRRGHGHESERSQIATIGDQAKVDLRFYPHPLFDCPFAIKAKKQPPKGSRAIVLRIRGIGLSRQGRGRRRGFLTDRYRESGGSWGLNKAVGLECILSIVRALRMGSCLSAESRSPIPGSPTSPAKHHRSRNKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVLREISLNTGSMNSDDATSFLSADEEFRASTDVDGTEKQPEIFHTLKESFLKAFRVMDRELRMHQTIDSFCSGTTAVTLVKQGQDLVIGNIGDSRAVMGTRDKDDSLVAIQLTVDLKPNLPAEAERIRKCKGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAIKAWRHKYPTSKIDDCAVVCLFLDANSSNLSSASNSKPEEHQGLGDQVSNAVENENLSGPNGLNRSGTVRSSKEILQDGSDEEDESKEEEQSEMGIEWSALEGVSRVNTLVNLPRFDPGKEDKKGRK 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24678812 24683553 + Lag0005639.1 Lac6g1670 611439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1670 610 PANTHER PROTEIN PHOSPHATASE 157 505 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac6g1670 610 MobiDBLite consensus disorder prediction 535 557 - -
Lac6g1670 610 CDD PP2Cc 187 506 IPR001932 -
Lac6g1670 610 SMART PP2C_4 178 504 IPR001932 -
Lac6g1670 610 FunFam probable protein phosphatase 2C 33 182 509 - -
Lac6g1670 610 Gene3D - 185 508 IPR036457 -
Lac6g1670 610 MobiDBLite consensus disorder prediction 135 165 - -
Lac6g1670 610 SUPERFAMILY PP2C-like 187 507 IPR036457 -
Lac6g1670 610 Pfam Protein phosphatase 2C 301 485 IPR001932 -
Lac6g1670 610 MobiDBLite consensus disorder prediction 535 582 - -
Lac6g1670 610 ProSiteProfiles PPM-type phosphatase domain profile. 187 506 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1670 Lac-Chr6:24678812 Lac9g2142 Lac-Chr9:40949550 4.80E-114 dispersed
Lac1g1821 Lac-Chr1:39862721 Lac6g1670 Lac-Chr6:24678812 8.30E-92 transposed
Lac2g0444 Lac-Chr2:3277745 Lac6g1670 Lac-Chr6:24678812 7.50E-85 transposed
Lac3g1663 Lac-Chr3:16338429 Lac6g1670 Lac-Chr6:24678812 3.90E-150 transposed
Lac4g1732 Lac-Chr4:36221281 Lac6g1670 Lac-Chr6:24678812 2.00E-132 transposed
Lac5g0625 Lac-Chr5:7426645 Lac6g1670 Lac-Chr6:24678812 2.20E-139 transposed
Lac3g2284 Lac-Chr3:30842002 Lac6g1670 Lac-Chr6:24678812 1.50E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1670 - - - 0.0