Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1794 ATGGGTTCAATGAACTGGTTAGGCTTCTCCCTCTCCCCTCAAGAACAACAACTCCCACAGCAACCCTCCGACCACCCTCACGCCGCCGCCGCCGTCCCCTTCACCGCCGACGACATCTCCGGCTCCACCGTCTCCACCGTCTGCTTTGACAACCTCCCTTCTTCCTATGGCGTCTACGAACCCTTCAACCGCAATAATCACTCTCAAGATTGGAATAATATCAAGGGTTTAGGGTCGGCTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCCAAGCTTGAAAATTTCCTCGGCCGCCACTCTTTCACCGACCACGACCACGCAGCTGCCGCCGCCGCTGCCGCCGTTGTGTACACTAATTCATCCGGCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCGTCTGATCAGGCCAACGGCGGTGGCGGAAGAGCCAACGCCGGAAACGGCAACAACAGTAGCTCTATTGGGTTGTCTATGATCAAAACGTGGCTGAGAAATCAACCGGCGCCGCCGCAAGCGGGAGCCAAGAGCGGCGGAGATCACGACGGTGCAGTTGGATCAGCGAATATCACAAACGCACATACTTTATCGCTATCAATGAACACCGGGCCACCGGCGCCGTCGCAGTCCTCCGGCTCGACGGCTCTTCCACTTCTCACGGCCAACGGCAGTGGAAGCGGCGGAGAAAGCTCCTCCTCCGATAACAAACAGCCCAAATCGGCTGCTGCGGAACTGGACGCCGAAAACGGCGCCGTTGAAGCTGTCCCGAGAAAATCTGTCGACACATTCGGACAAAGAACTTCTATCTACCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAACTAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCAAGAGCTTATGATTTAGCAGCACTTAAATACTGGGGTACCACAACCACAACTAATTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACCAGGCAAGAGTTTGTTGCGTCTCTCAGAAGGAAGAGTAGTGGGTTTTCTCGTGGAGCTTCCATTTACCGTGGAGTAACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGGAATAAAGACCTCTACTTGGGAACTTTCAGCACACAAGAGGAAGCAGCAGAGGCATACGACATAGCGGCCATAAAGTTTCGGGGACTAAACGCAGTGACCAACTTCGACATGAGTCGTTACGATGTCAAAGCCATTCTTGAAAGCAACACATTACCCATCGGCGGTGCTGCCAAGCGCTTAAAAGACATCGACCATTCCGACATCCCCCTCGACCCCCAACGAACCGACGACAACATAACGTCGCACCTCTCTGACGGAATAATCACCACCACCACCACCCCTTACGGTGGAGGATGGCCCACTCTCGCCTTCCACCACCACCCCTATGCCTTCCACTACCCCTATGCCACCCCACAACAACGCCTATGGTGTAAGCAAGAGCACGATGCCACCGCCACCGCCGCCGACAACTTCTTCCCCCAGGGCGGGGCCATGGACTCAATGGACCACAGCTCTGGCTCGAGCTCCGTTGTTTACAGCAGTGGCAGCGGAGACGGGTACGGTGCGAACTTCCTGATCCCGATGGGGGCGGCGGGGGCGGAAGGAAGCACCAACAACAACAATGGCGGATTGGGAGACATTGGAGAAGTGAATTTGTTTGGTTGTTCTTCTAACGTGGATGATCCGTACCATGCAACAAGGACGACCAATTTGTATAATTATCATAATTCCTCTCATCAGCTGCAGCCGCCGCCGGGGCTGCAAGGCTCCGCCTGCAACAACTGGCTTCCTCCCGCCAGGTCGGTATGTCATGGCGGAGCTCCGCCGCCCTTCACCATTTGGAATGACACTTGA 1983 53.5 MGSMNWLGFSLSPQEQQLPQQPSDHPHAAAAVPFTADDISGSTVSTVCFDNLPSSYGVYEPFNRNNHSQDWNNIKGLGSAQSSDFSALIETQHQPKLENFLGRHSFTDHDHAAAAAAAAVVYTNSSGNYMFQNCSLELPSDQANGGGGRANAGNGNNSSSIGLSMIKTWLRNQPAPPQAGAKSGGDHDGAVGSANITNAHTLSLSMNTGPPAPSQSSGSTALPLLTANGSGSGGESSSSDNKQPKSAAAELDAENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDNITSHLSDGIITTTTTPYGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDATATAADNFFPQGGAMDSMDHSSGSSSVVYSSGSGDGYGANFLIPMGAAGAEGSTNNNNGGLGDIGEVNLFGCSSNVDDPYHATRTTNLYNYHNSSHQLQPPPGLQGSACNNWLPPARSVCHGGAPPPFTIWNDT 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28856523 28861400 - Lag0005763.1 Lac6g1794 611563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1794 660 Gene3D AP2/ERF domain 374 434 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 Gene3D AP2/ERF domain 275 340 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 Pfam AP2 domain 375 424 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 ProSiteProfiles AP2/ERF domain profile. 374 432 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 CDD AP2 373 434 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 PRINTS Ethylene responsive element binding protein signature 414 434 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 PRINTS Ethylene responsive element binding protein signature 276 287 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 205 467 - -
Lac6g1794 660 CDD AP2 274 340 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 MobiDBLite consensus disorder prediction 173 258 - -
Lac6g1794 660 SUPERFAMILY DNA-binding domain 373 434 IPR016177 GO:0003677(InterPro)
Lac6g1794 660 ProSiteProfiles AP2/ERF domain profile. 275 338 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 MobiDBLite consensus disorder prediction 194 245 - -
Lac6g1794 660 FunFam AP2-like ethylene-responsive transcription factor 373 434 - -
Lac6g1794 660 FunFam AP2-like ethylene-responsive transcription factor ANT 274 340 - -
Lac6g1794 660 SUPERFAMILY DNA-binding domain 274 340 IPR016177 GO:0003677(InterPro)
Lac6g1794 660 SMART rav1_2 275 344 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac6g1794 660 SMART rav1_2 374 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2705 Lac-Chr1:48271738 Lac6g1794 Lac-Chr6:28856523 1.10E-92 dispersed
Lac6g0038 Lac-Chr6:352507 Lac6g1794 Lac-Chr6:28856523 5.50E-67 dispersed
Lac6g0226 Lac-Chr6:1805209 Lac6g1794 Lac-Chr6:28856523 8.20E-95 dispersed
Lac6g1794 Lac-Chr6:28856523 Lac8g0535 Lac-Chr8:7699221 3.60E-67 dispersed
Lac3g0326 Lac-Chr3:2331928 Lac6g1794 Lac-Chr6:28856523 1.40E-100 transposed
Lac9g2842 Lac-Chr9:46412527 Lac6g1794 Lac-Chr6:28856523 2.30E-105 transposed
Lac5g1833 Lac-Chr5:36354752 Lac6g1794 Lac-Chr6:28856523 1.30E-99 wgd
Lac6g1794 Lac-Chr6:28856523 Lac8g1280 Lac-Chr8:27917084 1.60E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24045 PF00847 AP2 3.50E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1794 K09285 - csv:101219473 1009.98