Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g1808 | ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGAGGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCTGCCATCGACAGCGACGATGCTGATGTCGGCGATTACGAGTTTGTTGATAATGATTCCGACGATTCAGATGATATGGTCTCCTATCGGCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACGGCAGCGACAGGAGGAAGACATCATGAGAGTGTCCACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCGGATGAAGAAAAGGTTCGTAGAGCTGTTGGCTTATTAGAAAAACCAGTTTTGCGACATTCAAATGAAGTAGAACTACCTTGTGGCATATGTTTTGAAATCTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGCTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTCACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATATTGAAGAATAGTGCAGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGCCCAAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAACGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTTCATCAAATGCAAACCGTGCATCTGGAAAAATTAAGTGATATTCAGTGCCAACCTGAGTCGCAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTAGAGTGTAGGCGAGTTCTGAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCTGATGGTTCTTCAAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTTGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGACGTGGACTCCCATGGTACCTGCAGCAGAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGGAAGGGCAAGATGAGCGCATTCAGAGCTAGTGGTTCAAGTCGAACCATCGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGGCGATAA | 1788 | 44.35 | MESEDELDMHDAHDDEDSVDNEEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLRHSNEVELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNADGSSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSAFRASGSSRTIDDTDHWSCEHCTFANVKSATFCQMCQQRR | 595 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29725082 | 29767523 | + | Lag0005777.1 | Lac6g1808 | 611577 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g1808 | 595 | CDD | BRcat_RBR_ANKIB1 | 221 | 285 | - | - | |
Lac6g1808 | 595 | SMART | ibrneu5 | 214 | 276 | IPR002867 | GO:0008270(InterPro) | |
Lac6g1808 | 595 | SMART | ibrneu5 | 280 | 350 | IPR002867 | GO:0008270(InterPro) | |
Lac6g1808 | 595 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 78 | 117 | IPR048962 | - | |
Lac6g1808 | 595 | Pfam | Ariadne domain | 363 | 527 | IPR045840 | - | |
Lac6g1808 | 595 | SUPERFAMILY | Ran binding protein zinc finger-like | 568 | 595 | IPR036443 | - | |
Lac6g1808 | 595 | MobiDBLite | consensus disorder prediction | 531 | 567 | - | - | |
Lac6g1808 | 595 | CDD | RING-HC_ARI6-like | 142 | 203 | - | - | |
Lac6g1808 | 595 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 226 | IPR013083 | - | |
Lac6g1808 | 595 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 54 | 404 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Lac6g1808 | 595 | Pfam | IBR domain, a half RING-finger domain | 214 | 276 | IPR002867 | GO:0008270(InterPro) | |
Lac6g1808 | 595 | Pfam | IBR domain | 298 | 338 | - | - | |
Lac6g1808 | 595 | CDD | Rcat_RBR_ARI7-like | 299 | 353 | - | - | |
Lac6g1808 | 595 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Lac6g1808 | 595 | SMART | zf_4 | 570 | 594 | IPR001876 | - | |
Lac6g1808 | 595 | ProSiteProfiles | TRIAD supradomain profile. | 141 | 354 | IPR044066 | - | |
Lac6g1808 | 595 | SUPERFAMILY | RING/U-box | 142 | 223 | - | - | |
Lac6g1808 | 595 | FunFam | RBR-type E3 ubiquitin transferase | 139 | 228 | - | - | |
Lac6g1808 | 595 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 568 | 595 | IPR001876 | - | |
Lac6g1808 | 595 | FunFam | RBR-type E3 ubiquitin transferase | 277 | 527 | - | - | |
Lac6g1808 | 595 | MobiDBLite | consensus disorder prediction | 531 | 545 | - | - | |
Lac6g1808 | 595 | SUPERFAMILY | RING/U-box | 295 | 343 | - | - | |
Lac6g1808 | 595 | ProSitePatterns | Zinc finger RanBP2-type signature. | 572 | 591 | IPR001876 | - | |
Lac6g1808 | 595 | Gene3D | - | 272 | 527 | - | - | |
Lac6g1808 | 595 | SUPERFAMILY | RING/U-box | 215 | 283 | - | - | |
Lac6g1808 | 595 | ProSiteProfiles | Zinc finger RING-type profile. | 145 | 189 | IPR001841 | - | |
Lac6g1808 | 595 | Gene3D | - | 567 | 595 | - | - | |
Lac6g1808 | 595 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g1746 | Lac-Chr4:36337324 | Lac6g1808 | Lac-Chr6:29725082 | 1.30E-260 | dispersed | |
Lac6g1808 | Lac-Chr6:29725082 | Lac9g1639 | Lac-Chr9:35734024 | 3.50E-53 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac6g1808 | K11968 | - | csv:101218052 | 1179.47 |