Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1808 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGAGGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCTGCCATCGACAGCGACGATGCTGATGTCGGCGATTACGAGTTTGTTGATAATGATTCCGACGATTCAGATGATATGGTCTCCTATCGGCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACGGCAGCGACAGGAGGAAGACATCATGAGAGTGTCCACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCGGATGAAGAAAAGGTTCGTAGAGCTGTTGGCTTATTAGAAAAACCAGTTTTGCGACATTCAAATGAAGTAGAACTACCTTGTGGCATATGTTTTGAAATCTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGCTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTCACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATATTGAAGAATAGTGCAGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGCCCAAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAACGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTTCATCAAATGCAAACCGTGCATCTGGAAAAATTAAGTGATATTCAGTGCCAACCTGAGTCGCAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTAGAGTGTAGGCGAGTTCTGAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCTGATGGTTCTTCAAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTTGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGACGTGGACTCCCATGGTACCTGCAGCAGAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGGAAGGGCAAGATGAGCGCATTCAGAGCTAGTGGTTCAAGTCGAACCATCGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGGCGATAA 1788 44.35 MESEDELDMHDAHDDEDSVDNEEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLRHSNEVELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNADGSSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSAFRASGSSRTIDDTDHWSCEHCTFANVKSATFCQMCQQRR 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29725082 29767523 + Lag0005777.1 Lac6g1808 611577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1808 595 CDD BRcat_RBR_ANKIB1 221 285 - -
Lac6g1808 595 SMART ibrneu5 214 276 IPR002867 GO:0008270(InterPro)
Lac6g1808 595 SMART ibrneu5 280 350 IPR002867 GO:0008270(InterPro)
Lac6g1808 595 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 78 117 IPR048962 -
Lac6g1808 595 Pfam Ariadne domain 363 527 IPR045840 -
Lac6g1808 595 SUPERFAMILY Ran binding protein zinc finger-like 568 595 IPR036443 -
Lac6g1808 595 MobiDBLite consensus disorder prediction 531 567 - -
Lac6g1808 595 CDD RING-HC_ARI6-like 142 203 - -
Lac6g1808 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Lac6g1808 595 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 404 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lac6g1808 595 Pfam IBR domain, a half RING-finger domain 214 276 IPR002867 GO:0008270(InterPro)
Lac6g1808 595 Pfam IBR domain 298 338 - -
Lac6g1808 595 CDD Rcat_RBR_ARI7-like 299 353 - -
Lac6g1808 595 MobiDBLite consensus disorder prediction 1 55 - -
Lac6g1808 595 SMART zf_4 570 594 IPR001876 -
Lac6g1808 595 ProSiteProfiles TRIAD supradomain profile. 141 354 IPR044066 -
Lac6g1808 595 SUPERFAMILY RING/U-box 142 223 - -
Lac6g1808 595 FunFam RBR-type E3 ubiquitin transferase 139 228 - -
Lac6g1808 595 ProSiteProfiles Zinc finger RanBP2 type profile. 568 595 IPR001876 -
Lac6g1808 595 FunFam RBR-type E3 ubiquitin transferase 277 527 - -
Lac6g1808 595 MobiDBLite consensus disorder prediction 531 545 - -
Lac6g1808 595 SUPERFAMILY RING/U-box 295 343 - -
Lac6g1808 595 ProSitePatterns Zinc finger RanBP2-type signature. 572 591 IPR001876 -
Lac6g1808 595 Gene3D - 272 527 - -
Lac6g1808 595 SUPERFAMILY RING/U-box 215 283 - -
Lac6g1808 595 ProSiteProfiles Zinc finger RING-type profile. 145 189 IPR001841 -
Lac6g1808 595 Gene3D - 567 595 - -
Lac6g1808 595 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1746 Lac-Chr4:36337324 Lac6g1808 Lac-Chr6:29725082 1.30E-260 dispersed
Lac6g1808 Lac-Chr6:29725082 Lac9g1639 Lac-Chr9:35734024 3.50E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1808 K11968 - csv:101218052 1179.47