Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1808 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGAGGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCTGCCATCGACAGCGACGATGCTGATGTCGGCGATTACGAGTTTGTTGATAATGATTCCGACGATTCAGATGATATGGTCTCCTATCGGCACCAGCAAAACTATATAATCTTGGCCGAGGCAGATATACGGCAGCGACAGGAGGAAGACATCATGAGAGTGTCCACTGTTCTTTCTATTTCAAAAGTAGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCGGATGAAGAAAAGGTTCGTAGAGCTGTTGGCTTATTAGAAAAACCAGTTTTGCGACATTCAAATGAAGTAGAACTACCTTGTGGCATATGTTTTGAAATCTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATGCGTGTTGGACAGGCTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTCACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAGATGGATATTGAAGAATAGTGCAGAGTCAGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGCCCAAAATGCAAACGACCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACTGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAACGCAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTTCATCAAATGCAAACCGTGCATCTGGAAAAATTAAGTGATATTCAGTGCCAACCTGAGTCGCAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTAGAGTGTAGGCGAGTTCTGAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCTGATGGTTCTTCAAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTTGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCGGACGTGGACTCCCATGGTACCTGCAGCAGAACAGCAAGCTCAAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGGAAGGGCAAGATGAGCGCATTCAGAGCTAGTGGTTCAAGTCGAACCATCGATGATACTGACCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAGTCAGCTACCTTCTGCCAAATGTGCCAGCAACGGCGATAA 1788 44.35 MESEDELDMHDAHDDEDSVDNEEDFYSGGDDDAAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLRHSNEVELPCGICFEIYSRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNADGSSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKMSAFRASGSSRTIDDTDHWSCEHCTFANVKSATFCQMCQQRR 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29725082 29767523 + Lag0005777.1 Lac6g1808 611577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1808 595 CDD BRcat_RBR_ANKIB1 221 285 - -
Lac6g1808 595 SMART ibrneu5 214 276 IPR002867 GO:0008270(InterPro)
Lac6g1808 595 SMART ibrneu5 280 350 IPR002867 GO:0008270(InterPro)
Lac6g1808 595 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 78 117 IPR048962 -
Lac6g1808 595 Pfam Ariadne domain 363 527 IPR045840 -
Lac6g1808 595 SUPERFAMILY Ran binding protein zinc finger-like 568 595 IPR036443 -
Lac6g1808 595 MobiDBLite consensus disorder prediction 531 567 - -
Lac6g1808 595 CDD RING-HC_ARI6-like 142 203 - -
Lac6g1808 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Lac6g1808 595 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 404 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lac6g1808 595 Pfam IBR domain, a half RING-finger domain 214 276 IPR002867 GO:0008270(InterPro)
Lac6g1808 595 Pfam IBR domain 298 338 - -
Lac6g1808 595 CDD Rcat_RBR_ARI7-like 299 353 - -
Lac6g1808 595 MobiDBLite consensus disorder prediction 1 55 - -
Lac6g1808 595 SMART zf_4 570 594 IPR001876 -
Lac6g1808 595 ProSiteProfiles TRIAD supradomain profile. 141 354 IPR044066 -
Lac6g1808 595 SUPERFAMILY RING/U-box 142 223 - -
Lac6g1808 595 FunFam RBR-type E3 ubiquitin transferase 139 228 - -
Lac6g1808 595 ProSiteProfiles Zinc finger RanBP2 type profile. 568 595 IPR001876 -
Lac6g1808 595 FunFam RBR-type E3 ubiquitin transferase 277 527 - -
Lac6g1808 595 MobiDBLite consensus disorder prediction 531 545 - -
Lac6g1808 595 SUPERFAMILY RING/U-box 295 343 - -
Lac6g1808 595 ProSitePatterns Zinc finger RanBP2-type signature. 572 591 IPR001876 -
Lac6g1808 595 Gene3D - 272 527 - -
Lac6g1808 595 SUPERFAMILY RING/U-box 215 283 - -
Lac6g1808 595 ProSiteProfiles Zinc finger RING-type profile. 145 189 IPR001841 -
Lac6g1808 595 Gene3D - 567 595 - -
Lac6g1808 595 MobiDBLite consensus disorder prediction 1 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1808 K11968 - - csv:101218052 1179.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1746 Lac-Chr4:36337324 Lac6g1808 Lac-Chr6:29725082 1.30E-260 dispersed
Lac6g1808 Lac-Chr6:29725082 Lac9g1639 Lac-Chr9:35734024 3.50E-53 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g1639 . 164 589 ARIADNE family AT4G34370 72.0 2.6e-183 639.0
Lac9g1639 . 58 542 ARIADNE family AT2G16090 77.2 2.4e-225 778.9
Lac9g1639 . 38 543 ARIADNE family AT3G27710 61.6 5.6e-183 638.3
Lac9g1639 . 44 522 ARIADNE family AT3G27720 54.7 6.1e-144 508.4
Lac6g1808 . 1 540 ARIADNE family AT1G05890 64.3 3.3e-221 765.4
Lac4g1746 . 61 535 ARIADNE family AT1G05890 73.9 5.3e-219 758.1
Lac6g1808 . 19 595 ARIADNE family AT1G65430 74.4 5.8e-263 904.0
Lac4g1746 . 16 589 ARIADNE family AT1G65430 69.7 1.9e-245 845.9
Lac6g1808 . 15 459 ARIADNE family AT2G31780 54.5 8.8e-150 527.7
Lac4g1746 . 58 454 ARIADNE family AT2G31780 58.1 9.4e-144 507.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72