Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g1894 ATGGCCACTCTTTCTTGCCAACCTTCCGATTTGGCGTCACTCCTCGGCTCCACAGCCACCACCAATTCCACCGCCTTAGCCGAGTTCCTATGCTCAAGGTTCAACACCGTCGCCACCAGTTTCAGCTCCACCACCTACGCCGTCGACAACACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGCTTCGCCATGCTTTGCGCTGGCTCTGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGTGGCCTCTCCTACTACCTCTTCGGCTTTGCCTTCGCCTTCGGTGCCCCCTCCAACTCTTTCATTGGCCGCCACTTCTTCGGCCTCTCCAATTTTCCCAACCCCCAAACTGATTATAGCTTCTTCCTCTACCAATGGGCCTTTGCTATTGCTGCAGCTGGTATCACTAGTGGTTCCATAGCTGAACGAACCCAATTTGTAGCCTACCTCATCTACTCCACCGTTCTAACTGGGTTCGTCTACCCCATAGTCTCCCACTGGTTTTGGTCCGGAGATGGATGGGCCAGCCCAGCCCGATCCAATAACCTCCTATTCAACTCGGGAGCAATTGACTTCGCCGGCTCAGGCGTGGTCCACATGGTCGGTGGCATAGCCGGCCTCTGGGGCGCCCTGATTGAAGGCCCTCGAATCGGCCGGTTCGACCGCTCCGGCCGATCCGTTGCCCTTCGCGGTCACAGCGCTTCCTTAGTAGTCCTTGGCTCATTTCTTCTCTGGTTCGGCTGGTACGGCTTCAACCCCGGCTCCTTCCTAACCATTTCCAAATCCTACAACGACGGCCGCCCTTACTACGGCCAATGGAGCGCCATAGGCCGAACCGGAGTCACCACAACACTAGCCGGATGCACAGCCGCCCTAACAACCCTCTTCACAAAACGCCTCTTAGTCGGCCACTGGAACGTAATCGACGTCTGCAACGGCCTATTAGGCGGGTTCGCCGCCATCACATCCGGCTGCTCGGTGGTCGAGCCATGGGCGGCGGTGATATGCGGGTTCGTAGCGTCGTGGGTGCTAATCGGGTTCAACAAGCTAGCGGAGAGGTTCAGCTACGACGACCCATTGGAGGCGGCGCAACTACACGGCGGGTGCGGAGCGTGGGGGCTGATATTCACAGGACTGTTCGCGAGAAAGGAGTACGTGGAGGAGGTGTATAAGGCAGGGAGGCCGTACGGGCTGTTCATGGGCGGCGGAGGGAGGCTGCTGGCGGCTCAGGTGGTGGAGATAGCGGCAATAGTGGGGTGGGTGTCGTTGACGATGGGGGGGCTGTTTTTTGGTCTGAAGAAGGGGGGATTGCTGAGGATATCTCGGGAGGATGAGATGGCGGGGATGGATATGACGAGGCATGGGGGGTTTGCTTATGTATATAATGATGAAGATGATCCGTCGGGGAAGCCGGCTGGGTTTATGATGAGGAGGATCGAGCCTGCAGATGGGAGTCCGGCTAGTCCTTCTGGGATGGCGGCTGTTTGA 1527 58.22 MATLSCQPSDLASLLGSTATTNSTALAEFLCSRFNTVATSFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPQTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPIVSHWFWSGDGWASPARSNNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAVICGFVASWVLIGFNKLAERFSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVEEVYKAGRPYGLFMGGGGRLLAAQVVEIAAIVGWVSLTMGGLFFGLKKGGLLRISREDEMAGMDMTRHGGFAYVYNDEDDPSGKPAGFMMRRIEPADGSPASPSGMAAV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32513523 32515197 + Lag0005863.1 Lac6g1894 611663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g1894 508 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac6g1894 508 FunFam Ammonium transporter 30 487 - -
Lac6g1894 508 PANTHER AMMONIUM TRANSPORTER 17 480 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Lac6g1894 508 Gene3D Ammonium transporter AmtB like domains 30 485 IPR029020 -
Lac6g1894 508 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac6g1894 508 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac6g1894 508 SUPERFAMILY Ammonium transporter 46 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1894 Lac-Chr6:32513523 Lac7g0518 Lac-Chr7:4121012 3.20E-204 dispersed
Lac6g1894 Lac-Chr6:32513523 Lac11g2567 Lac-Chr11:41730680 6.80E-207 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g1894 K03320 - csv:101222356 896.73