Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2035 ATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGAAGATAATGATGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCCTTCTCCCTAGGGAAGGTGCACAATCATGAAAAACAAGATAGTCATGTCCCTGTTAGTTTGACGACAACCGTCTCTGAATCACAACCAGTTAAAGTGGAAACGGAGGTAGAAGTTGCTGATGTTGCAAAAGTAACAAGGTCCCTCCGACGTAAACCATGTATAAACTATAGACAATACGATTACTGCTCTGACGATGAGCTTGGTACAAAGCGTCTTGATCAGAATTTTTCTTCCAGGCCTCCTCTTTCAAAGGGAGTCATCCGTGGATGTCCCCAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCTTCCAGAAGAATCCTGCCGGACGGAGCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATTCGAGCAAAAGCAGAACCATATGGGATTTGTCGTATAGTCCCGCCATCTTCTTGGAAACCTCCATGCCCTCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGTGACTCGTGTCCAAAGAATTGATAAGCTTCAGAATCGAGATTCAATAAGAAAGAACTTTAGGGTTTGCAATCAAATGAGAAGGAAAAGGAGGAGGGTTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAATGGAGATGCTGGGTCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTACTTTAGCATCATTTCAAAAATATGCCGATGACTTTAAGTTTCAGTATTTTAGCAAACCACTCAATGATACTGCAAAGGGATGTGACCCATCCTTGCTGCCAGAAAACGAACATTGGAAACCATCTTTGGAAAATATTGAAGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTGCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCAAAAGGTTGCTGTCAAGAGGGCTCTACATCAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTTCTTAGCTACGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGTAAATTAGAAGAGGCTATGAGAAAGCATTTACCTGACCTTTTTGAAGAACAACCCGATTTACTTCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAGCTGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGCCAAATTGCTGTAGAATTATATCGTGAGCAGGGACGAAGAACCACTATTTCCCATGATAAACTATTGCTTGGTGCCGCTAGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAATGTTTGTGGAAAAGATGGAGTCTTAGCAAGAGCATTCAAGACACGTGTTGAGATGGAGTGTGCATGGAGGAACTTTCCTGGCAGTTCTTCTCAGGCAATGAAGATGGAGAGCAACTTTGATGCTTCTAATGAGAGAGAATGCAGTTCATGTCTCTTTGACTTGCATCTATCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCAAAGCAATTGTGTTCTTGTGCTTGGGAAGAGAGATTCTTTCTCTTTCGCTATGACATCAGTGAACTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCATTGGGAATCCTCAATGGAAAGAATTCTTGAGGCAATCTTCATTACTGCCAACTCGAACTACTATTGGCAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACAGCTTCTTTTCTAGAAGATAAGAAGGTAATTCCCACACCTAACGAATCTCAGAAGGAAGTTGAGCAGCAAAATCATAAATCTCAGGTGAAAAGAGAAAACCATGACCTTGTGGCAACCAATTTGAGGCATGTAGGTTCGGAGTTCTCTAAGGAGGATACTAATGCTCTGAATTTGGTAGAAGAGAAAAATAGAATGGATAAAATGTGTCCTGAAAATGTCATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTCTAGCTGAAAGTGCATTAGTAAAGCAGCTGGAAACTTCAGATCGAATCACTGATGTTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATACAATCTTGCACACCCCGGTGACTGATGCCACGACCATGGCAGAAAAGGAGGTCAACTTGTTGATTGAAAAAAAATTGAACAATTGCCAATTGAGCATCGTACCTTTAAATAATAAACAGTCTCAAAACATTAACTTATCAGTTAGAAATGCAGCCAATGCTATTCAGAACAACAATTTGTCAGAAGCAGGAGTAGGTCATAGTAATAAAGTATTTCCAGCTTCAACAGACACTAATTCTCAGAAACCACAGACATGTGGCTCTGGAAAACCGAATGAGGGCAAGCATGGAAATTTGGGAACAAGTGCTACCTCTTGTTTGTTAGACACTAATAGAACTACTGAAAATTTATCCTGCAATCAAGCTAATGTGGACCGATTCTTGAGGCAAAAGGGTCCTCGAATGGCAAAGGTTGTTCGGAGGATTAACTGCAATGTAGAGCCTTTAGAATATGGAATTGTGCTCCCAGGAAAGTCTTGGTCGAACAGTCAGGCCATTTTTCCAAAGGGATTTAAGAGCAGGGTCAAGTATATAAATGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAGATTCTCGATGCTGGACGGGAAGAACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCGAGTGAGGTATTCGTTCATGTTTCTGCTGCCAGATGTTGGGAGTTGATTAGAGACCGAGTCAATCAGGAAATCGCAAAGCAACATAAGTTGGGTAGAACAAATCTTCCTCCTCTACAGCCTCCTGGGAGTTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCCGCAATTGTGCAGGCCGTTGAGGCATTGGATCGAAATCGAGTGTGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCATGTACAGAGTCCACAACCGTCTCAGTCAACAGAAATTAGTCGAAACATGCAAACAACCGAGAGGAACCACAGGGTTGATTCTAGGCCAGCTGGAGTTGATATAATACTTGGGGGATTGTTGAAGAAAGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCGAGACGTGCTGACACGACTTGTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3711 41.88 MGTELIRVCVEEDNDDFPSVPPGFESYISFSLGKVHNHEKQDSHVPVSLTTTVSESQPVKVETEVEVADVAKVTRSLRRKPCINYRQYDYCSDDELGTKRLDQNFSSRPPLSKGVIRGCPQCNNCQKVVARWLPEESCRTELEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFVTRVQRIDKLQNRDSIRKNFRVCNQMRRKRRRVNRKGVDVTTLNGKNGDAGSYEAERFGFDPGPDFTLASFQKYADDFKFQYFSKPLNDTAKGCDPSLLPENEHWKPSLENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKGCCQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKAEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGVLARAFKTRVEMECAWRNFPGSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERFFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSIGNPQWKEFLRQSSLLPTRTTIGSPSHHAKKLSEVTASFLEDKKVIPTPNESQKEVEQQNHKSQVKRENHDLVATNLRHVGSEFSKEDTNALNLVEEKNRMDKMCPENVILLSDDEGDEHKKTISNGLAESALVKQLETSDRITDVDSKASLCNYNENTILHTPVTDATTMAEKEVNLLIEKKLNNCQLSIVPLNNKQSQNINLSVRNAANAIQNNNLSEAGVGHSNKVFPASTDTNSQKPQTCGSGKPNEGKHGNLGTSATSCLLDTNRTTENLSCNQANVDRFLRQKGPRMAKVVRRINCNVEPLEYGIVLPGKSWSNSQAIFPKGFKSRVKYINVLDPSTLCYYVSEILDAGREEPLFMVVLEHCPSEVFVHVSAARCWELIRDRVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAVEALDRNRVCGEYWDSRPYSRPHVQSPQPSQSTEISRNMQTTERNHRVDSRPAGVDIILGGLLKKANLEELNSLYTLLNDNRPTVDRDVLTRLVNEEIQSHRR 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35537685 35546881 + Lag0006004.1 Lac6g2035 611804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2035 1236 SMART fyrn_3 1014 1058 IPR003888 GO:0005634(InterPro)
Lac6g2035 1236 ProSiteProfiles FYR domain FYRN motif profile. 1000 1058 IPR003888 GO:0005634(InterPro)
Lac6g2035 1236 SMART cupin_9 359 525 IPR003347 -
Lac6g2035 1236 MobiDBLite consensus disorder prediction 937 961 - -
Lac6g2035 1236 SUPERFAMILY Clavaminate synthase-like 329 552 - -
Lac6g2035 1236 SMART JmjN_1 144 185 IPR003349 -
Lac6g2035 1236 SMART fyrc_3 1064 1158 IPR003889 GO:0005634(InterPro)
Lac6g2035 1236 MobiDBLite consensus disorder prediction 1152 1180 - -
Lac6g2035 1236 Pfam jmjN domain 146 179 IPR003349 -
Lac6g2035 1236 Pfam F/Y rich C-terminus 1062 1146 IPR003889 GO:0005634(InterPro)
Lac6g2035 1236 ProSiteProfiles FYR domain FYRC motif profile. 1060 1150 IPR003889 GO:0005634(InterPro)
Lac6g2035 1236 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Lac6g2035 1236 Pfam C5HC2 zinc finger 615 666 IPR004198 -
Lac6g2035 1236 ProSiteProfiles JmjC domain profile. 359 525 IPR003347 -
Lac6g2035 1236 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
Lac6g2035 1236 MobiDBLite consensus disorder prediction 1154 1172 - -
Lac6g2035 1236 Gene3D Cupin 130 509 - -
Lac6g2035 1236 PANTHER LYSINE-SPECIFIC DEMETHYLASE 126 938 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Lac6g2035 1236 MobiDBLite consensus disorder prediction 751 771 - -
Lac6g2035 1236 FunFam Putative lysine-specific demethylase JMJ16 1006 1144 - -
Lac6g2035 1236 Pfam F/Y-rich N-terminus 1014 1057 IPR003888 GO:0005634(InterPro)
Lac6g2035 1236 Gene3D - 1007 1144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2035 K11446 - - csv:101208186 2184.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1268 Lac-Chr10:11181265 Lac6g2035 Lac-Chr6:35537685 4.40E-232 dispersed
Lac11g2097 Lac-Chr11:36864793 Lac6g2035 Lac-Chr6:35537685 1.10E-92 dispersed
Lac4g1871 Lac-Chr4:37963892 Lac6g2035 Lac-Chr6:35537685 1.30E-178 dispersed
Lac6g2035 Lac-Chr6:35537685 Lac9g1477 Lac-Chr9:33117063 2.00E-50 dispersed
Lac6g2035 Lac-Chr6:35537685 Lac5g0192 Lac-Chr5:1650264 7.80E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g2035 . 1 1235 JUMONJI Transcription Factor Family AT1G08620 54.1 0.0e+00 1245.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24051 PF02373 JmjC 1.40E-44 CL0029 Lac TR