Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2163 ATGTTGGAGGGTGGTCAGAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCACAAGGGTTCTACCATAAACTTGGCGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACAAGCAATGATGGAGGGTCGGTAGCAATGTCTTTGGATAACAGCAGTGTAGGATCAAATGAATCTCATACTCGGATCTTAAATCACCAAGGGTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACACAGTGTTAACCGTCGTGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTGTTTGATAGTAATACTCCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTCTACAGAGGTACTTATGATGGCGAGGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCACAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAAGCACCCAAACATTGTCCGGTTTATTGGAGCATGTCATAAGCCAATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGTGGTTCAGTTAGACAGTTCTTGATGAGGCGACAAAGTCGCTCTGTCCCCCTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCTAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCACAGGGACTTGAAATCAGACAACCTTTTGATTTTTGCGGATAAGTCCATCAAGGTTGCGGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAGGGAATGACACCCGAGACTGGAACCTACCGCTGGATGGCTCCGTAA 906 45.47 MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMRRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAP 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37875367 37876272 + Lag0006132.1 Lac6g2163 611932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2163 301 SMART serkin_6 132 299 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2163 301 PANTHER SERINE-THREONINE PROTEIN KINASE 75 301 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac6g2163 301 Gene3D Phosphorylase Kinase; domain 1 123 207 - -
Lac6g2163 301 Gene3D Transferase(Phosphotransferase) domain 1 208 301 - -
Lac6g2163 301 SUPERFAMILY Protein kinase-like (PK-like) 120 301 IPR011009 -
Lac6g2163 301 FunFam Serine/threonine-protein kinase isoform 1 122 214 - -
Lac6g2163 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac6g2163 301 ProSiteProfiles Protein kinase domain profile. 132 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac6g2163 301 Pfam Protein kinase domain 140 301 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2163 Lac-Chr6:37875367 Lac8g0205 Lac-Chr8:2314970 2.30E-40 dispersed
Lac2g2648 Lac-Chr2:40772503 Lac6g2163 Lac-Chr6:37875367 3.00E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86271 PF07714 PK_Tyr_Ser-Thr 2.10E-37 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2163 - - - 0.0