Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2202 ATGGCTTGCTCTTCAACAAAATCTAGTGTTTTTCTTTCTCTGTGTACAATGGTTGTTGTTTCTCTTGTTACTAAGTTCATATTCCCAATGTCTCCAATTGCTTTTGGAGTCACCATCTTCCTTCTTCCTCTCCTAACTTACATCATCTCTTCCATGGCCTTCTCTTCCAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATCTTTGGCAATTGGCTCCAAGTTGGAAATGACCTCAACCATCGCCTTCTTGCTTCCTTCACCAAGAAATTCGGCTCCATCTTCCTCTTGAAGCTCGGCTCCAAGAACCTTGTTGTCGTGTCTGATGCCGAGCTCGCTAGCCAAGTTCTCCATGCTCAAGGTGTTGAGTTTGGTTCCCGCCCCCGAAATGTCGTGTTTGATATCTTCACTGGAAATGGTCAGGATATGGTGTTCACGGTTTATGGAGATCATTGGCGTAAGATGCGTAGAATCATGACGTTGCCGTTTTTCACGAATAAGGTGGTGCACAACTATAGTGACATGTGGGAGGACGAAATGGACTCTGTAGTTCGTGACCTCAAGAGTAACAAGAAGTTTCAATTGGAAGGGATAGTCATCAGAAAACGTTTGCAACTGATGTTGTACAATATCATGTATAGAATGATGTTTGATGCAAAGTTTGAGTCCCAAGAGGATCCTTTGTTCATTGAAGCAACTCGATTCAACTCAGAAAGGAGTCGATTGGCACAAAGTTTCGAATACAACTATGGAGATTTCATTCCTTTGCTCAGACCCTTCTTGAGAGGTTACTTGAATAAGTGTAGGGATTTGCAGAGTAGGAGGCTAGACTTTTTCAACAAAAACTACGTCGAGAAAAGAAGAAAGATAATGACTGCCAATGGAGATAAACACAAGATAAGTTGCGCCATGGATCATATCATAGACGCTCAAATAAAAGGTGAAATCAGTGAAGAGAATGTGATTTACATCGTAGAGAACATCAACGTGGCAGCGATAGAAACCACATTGTGGTCGATGGAATGGGCAATAGCTGAGTTGGTGAATCATCCAGAAATTCAACGTAAGATTCGAGAGGAGCTAACTAATGTCCTAAAAGGAAAGGAGGTGACAGAATCTAACCTTCATGAACTGCCATACTTACAAGCAACAGTGAAAGAGACACTAAGATTGCACACTCCAATACCATTGTTGGTGCCACATATGAACTTAGAAGAAGCAAAGCTTGGAGGATACACCATTCCAAAGGAATCCAAGGTGGTGGTCAATGCATGGTGGCTAGCGAACAACCCTGAGTGGTGGAAAAATCCAGAGGAGTTCAGGCCAGAAAGGTTCTTTGAAGAAGAAAGTGGCACAGAAGCTGTTGCAGCAGGGAAAGTGGATTATCGATTCTTACCATTTGGAGTTGGAAGGAGAAGTTGCCCTGGAATTGTTTTGGCAATGCCAATCTTAGGGCTCATCGTTGCCAAATTGGTTTCAAAGTTTGAAATGAAGCCTCCTAGTGGAATGGAGAAGATCGATGTCACCGAGAAAGGAGGACAGTTTAGTCTGCATATCGCCAACCACTCGACAGTTATTTTTGACCCCATAATTGCTTAA 1596 43.05 MACSSTKSSVFLSLCTMVVVSLVTKFIFPMSPIAFGVTIFLLPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASFTKKFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSDMWEDEMDSVVRDLKSNKKFQLEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMTANGDKHKISCAMDHIIDAQIKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQRKIREELTNVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGTEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPSGMEKIDVTEKGGQFSLHIANHSTVIFDPIIA 531
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 38528934 38530659 + Lag0006171.1 Lac6g2202 611971
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2202 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac6g2202 531 Pfam Cytochrome P450 59 520 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 206 224 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 FunFam Trans-cinnamate 4-monooxygenase 49 523 - -
Lac6g2202 531 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 42 529 - GO:0004497(PANTHER)
Lac6g2202 531 SUPERFAMILY Cytochrome P450 59 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2202 531 Gene3D Cytochrome P450 53 524 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2202 Lac-Chr6:38528934 Lac6g2209 Lac-Chr6:38606283 9.40E-292 dispersed
Lac6g2202 Lac-Chr6:38528934 Lac6g2207 Lac-Chr6:38596364 8.50E-293 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2202 K00487 - csv:101204747 995.727