Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g2202 | ATGGCTTGCTCTTCAACAAAATCTAGTGTTTTTCTTTCTCTGTGTACAATGGTTGTTGTTTCTCTTGTTACTAAGTTCATATTCCCAATGTCTCCAATTGCTTTTGGAGTCACCATCTTCCTTCTTCCTCTCCTAACTTACATCATCTCTTCCATGGCCTTCTCTTCCAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATCTTTGGCAATTGGCTCCAAGTTGGAAATGACCTCAACCATCGCCTTCTTGCTTCCTTCACCAAGAAATTCGGCTCCATCTTCCTCTTGAAGCTCGGCTCCAAGAACCTTGTTGTCGTGTCTGATGCCGAGCTCGCTAGCCAAGTTCTCCATGCTCAAGGTGTTGAGTTTGGTTCCCGCCCCCGAAATGTCGTGTTTGATATCTTCACTGGAAATGGTCAGGATATGGTGTTCACGGTTTATGGAGATCATTGGCGTAAGATGCGTAGAATCATGACGTTGCCGTTTTTCACGAATAAGGTGGTGCACAACTATAGTGACATGTGGGAGGACGAAATGGACTCTGTAGTTCGTGACCTCAAGAGTAACAAGAAGTTTCAATTGGAAGGGATAGTCATCAGAAAACGTTTGCAACTGATGTTGTACAATATCATGTATAGAATGATGTTTGATGCAAAGTTTGAGTCCCAAGAGGATCCTTTGTTCATTGAAGCAACTCGATTCAACTCAGAAAGGAGTCGATTGGCACAAAGTTTCGAATACAACTATGGAGATTTCATTCCTTTGCTCAGACCCTTCTTGAGAGGTTACTTGAATAAGTGTAGGGATTTGCAGAGTAGGAGGCTAGACTTTTTCAACAAAAACTACGTCGAGAAAAGAAGAAAGATAATGACTGCCAATGGAGATAAACACAAGATAAGTTGCGCCATGGATCATATCATAGACGCTCAAATAAAAGGTGAAATCAGTGAAGAGAATGTGATTTACATCGTAGAGAACATCAACGTGGCAGCGATAGAAACCACATTGTGGTCGATGGAATGGGCAATAGCTGAGTTGGTGAATCATCCAGAAATTCAACGTAAGATTCGAGAGGAGCTAACTAATGTCCTAAAAGGAAAGGAGGTGACAGAATCTAACCTTCATGAACTGCCATACTTACAAGCAACAGTGAAAGAGACACTAAGATTGCACACTCCAATACCATTGTTGGTGCCACATATGAACTTAGAAGAAGCAAAGCTTGGAGGATACACCATTCCAAAGGAATCCAAGGTGGTGGTCAATGCATGGTGGCTAGCGAACAACCCTGAGTGGTGGAAAAATCCAGAGGAGTTCAGGCCAGAAAGGTTCTTTGAAGAAGAAAGTGGCACAGAAGCTGTTGCAGCAGGGAAAGTGGATTATCGATTCTTACCATTTGGAGTTGGAAGGAGAAGTTGCCCTGGAATTGTTTTGGCAATGCCAATCTTAGGGCTCATCGTTGCCAAATTGGTTTCAAAGTTTGAAATGAAGCCTCCTAGTGGAATGGAGAAGATCGATGTCACCGAGAAAGGAGGACAGTTTAGTCTGCATATCGCCAACCACTCGACAGTTATTTTTGACCCCATAATTGCTTAA | 1596 | 43.05 | MACSSTKSSVFLSLCTMVVVSLVTKFIFPMSPIAFGVTIFLLPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASFTKKFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSDMWEDEMDSVVRDLKSNKKFQLEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMTANGDKHKISCAMDHIIDAQIKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQRKIREELTNVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGTEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPSGMEKIDVTEKGGQFSLHIANHSTVIFDPIIA | 531 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 38528934 | 38530659 | + | Lag0006171.1 | Lac6g2202 | 611971 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g2202 | 531 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 466 | 475 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac6g2202 | 531 | Pfam | Cytochrome P450 | 59 | 520 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 87 | 106 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 463 | 473 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 206 | 224 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 319 | 336 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 473 | 496 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 422 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 339 | 365 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | E-class P450 group I signature | 111 | 132 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | FunFam | Trans-cinnamate 4-monooxygenase | 49 | 523 | - | - | |
| Lac6g2202 | 531 | PRINTS | P450 superfamily signature | 464 | 473 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | P450 superfamily signature | 330 | 347 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 42 | 529 | - | GO:0004497(PANTHER) | |
| Lac6g2202 | 531 | SUPERFAMILY | Cytochrome P450 | 59 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2202 | 531 | Gene3D | Cytochrome P450 | 53 | 524 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g2202 | Lac-Chr6:38528934 | Lac6g2209 | Lac-Chr6:38606283 | 9.40E-292 | dispersed | |
| Lac6g2202 | Lac-Chr6:38528934 | Lac6g2207 | Lac-Chr6:38596364 | 8.50E-293 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g2202 | K00487 | - | csv:101204747 | 995.727 |