Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g2207 | ATGGCTTCCAATGCTTTTCTTTCTCTGTGTACAATGGTTGTTGTTTCTCTTGTTACTAAGTTCATATTCCCAATGTCTCCAATTGCTTTTGGAGTCACCATCTTCCTTCTTCCTCTCCTAACTTACATCATCTCTTCCATGGCCTTCTCTTCCAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATCTTTGGCAATTGGCTCCAAGTTGGAAATGACCTCAACCATCGCCTTCTTGCTTCCTTCACCAAGAAATTCGGCTCCATCTTCCTCTTGAAGCTCGGCTCCAAGAACCTTGTTGTCGTGTCTGATGCTGAGCTTGCCAGTCAGGTTCTTCATGCACAGGGCGTTGAGTTTGGATCTCGCCCTCGAAATGTCGTGTTTGATATCTTTACTGGTAATGGTCAGGATATGGTGTTTACGGTTTATGGAGACCATTGGCGTAAGATGCGAAGAATCATGACATTGCCGTTTTTCACGAACAAGGTGGTGCACAACTACAGTGGCATGTGGGAGGATGAGATGGATTCTGTGGTTCGGGATCTTAAGAGTAACGAGAAGTTCCAATCGGAAGGGATAGTTATTAGAAAACGTTTGCAATTGATGTTGTACAATATCATGTACAGAATGATGTTTGATGCAAAGTTTGAGTCCCAAGAGGATCCTTTGTTCATTGAAGCAACTCAATTCAACTCAAAAAGGAGTCAATTGGCACAAAGCTTTGAATACAACTATGGAGATTTCATTCCTTTGCTTAGACCCTTCTTGAGAGGGTACTTGAACAAGTGTAGGGATTTGCAGAGCAGGAGATTGGATTTTTTCAACAAAAACTATGTTGAGAAAAGAAGAAAGATAATGGATGCCAATGGAGACAAGCACAAGATAAGTTGTGCCATGGATCATATCATAGACGCTCAATTGAAAGGTGAGATTAGTGAAGAGAATGTGATCTACATCGTAGAGAACATCAATGTGGCAGCGATAGAGACGACATTATGGTCAATGGAATGGGCAATAGCCGAGCTGGTGAATCATCCAAACATCCAACAAAAGATTCGTGAGGAGATTGCCAATGTCCTCAAAGGAAAGGAAGTGACTGAATCCAACCTTCACGAATTGCCATACTTGCAAGCGACGGTGAAAGAGACACTAAGATTGCACACTCCAATACCATTGTTGGTGCCACATATGAACTTAGAGGAGGCAAAGTTGGGAGGGTACACCATTCCAAAAGAATCCAAGGTGGTGGTCAATGCATGGTGGCTAGCAAACAACCCCGCATGGTGGAAAAATCCCGAGGAGTTTAGGCCAGAAAGGTTCTTTGAAGAAGAAAGTGGCACAGAAGTCGTTGCAGCAGGGAAAGTGGATTACCGATTCTTACCATTTGGAGTGGGAAGGAGAAGTTGCCCTGGAATTGTTTTAGCAATGCCAATTTTAGGGCTCATCGTTGCCAAATTAGTTTCAAAGTTTGAAATGAAGCCTCCTAGTGAGATGGAGAAGATCGATGTCATTGAGAAAGGAGGCCAATTCAGTTTGCATATCGCCAACCACTCCACGGTTGTTTTTGACCCCATAATGGCTTAA | 1581 | 43.45 | MASNAFLSLCTMVVVSLVTKFIFPMSPIAFGVTIFLLPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASFTKKFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEDEMDSVVRDLKSNEKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATQFNSKRSQLAQSFEYNYGDFIPLLRPFLRGYLNKCRDLQSRRLDFFNKNYVEKRRKIMDANGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPNIQQKIREEIANVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPAWWKNPEEFRPERFFEEESGTEVVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPSEMEKIDVIEKGGQFSLHIANHSTVVFDPIMA | 526 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 38596364 | 38598038 | + | Lag0006176.1 | Lac6g2207 | 611976 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g2207 | 526 | Gene3D | Cytochrome P450 | 48 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 376 | 394 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 82 | 101 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 334 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 417 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 106 | 127 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 314 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | E-class P450 group I signature | 201 | 219 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 37 | 525 | - | GO:0004497(PANTHER) | |
| Lac6g2207 | 526 | SUPERFAMILY | Cytochrome P450 | 54 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | FunFam | Trans-cinnamate 4-monooxygenase | 44 | 518 | - | - | |
| Lac6g2207 | 526 | Pfam | Cytochrome P450 | 54 | 515 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | P450 superfamily signature | 377 | 388 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac6g2207 | 526 | PRINTS | P450 superfamily signature | 325 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g2207 | Lac-Chr6:38596364 | Lac6g2210 | Lac-Chr6:38619470 | 1.50E-257 | dispersed | |
| Lac6g2202 | Lac-Chr6:38528934 | Lac6g2207 | Lac-Chr6:38596364 | 8.50E-293 | proximal | |
| Lac6g2207 | Lac-Chr6:38596364 | Lac6g2209 | Lac-Chr6:38606283 | 1.30E-293 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g2207 | K00487 | - | csv:105434566 | 981.859 |