Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2209 ATGGCTTCCAGTGCTTTTCTTTCTCTGTGTACAATGGTTGTTGTTTCTCTTGTTACTAAGTTCATATTCCCAATGTCTCCAATTGCTTTTGGAGTCACCATCTTCCTTCTTCCTCTCCTTACTTACATCATCTCTTCCATGGCCTTCTCTTCCAAGCTTCCTCCTGGCCCTCTCTCCATTCCCATCTTTGGCAATTGGCTCCAAGTTGGAAATGACCTCAACCATCGCCTTCTTGCTTCCTTCACCAAGAGATTCGGCTCCATCTTCCTCTTGAAGCTTGGCTCCAAGAATCTCGTTGTCGTGTCTGATGCTGAGCTTGCCAGTCAGGTTCTTCATGCGCAGGGCATTGAGTTTGGCTCTCGCCCTCGTAATGTTGTGTTTGATATCTTTACTGGTAATGGTCAAGATATGGTGTTTACCGTTTATGGAGACCATTGGCGTAAGATGCGCAGAATCATGACGTTGCCGTTTTTCACGAACAAGGTGGTGCACAACTACAGTGGCATGTGGGAGGATGAGATGGATTTTGTGGTTCGTGATCTTAAGAGTAACGAGAAGTTCCAATCGGAAGGGATAGTTATTAGAAAACGTTTGCAATTGATGTTGTACAATATCATGTACAGAATGATGTTTGATGCAAAGTTTGAATCCCAAGAGGATCCTTTGTTCATTGAAGCAACTCAATTCAACTCAAAAAGGAGTCAATTGGCACAAAGCTTTGAATACAACTATGGAGATTTCATTCCTTTGCTTAGACCCTTCTTGAGAGTGTACTTGAACAAGTGTAGGGATTTGCAGAGCAGGAGATTGGATTTTTTCAACAAAAACTACGTTGAGAAAAGAAGGAAGATAATGGCTGCCAATGGAGACAAGCACAAGATAAGTTGTGCCATGGATCATATCATAGACGCTCAATTGAAAGGTGAGATTAGTGAAGAGAATGTTATTTACATCGTGGAAAACATCAATGTGGCGGCTATAGAAACGACATTGTGGTCGATGGAATGGGCGATAGCTGAATTGGTGAACCATCCAGACATCCAACACAAGATTCGAGAGGAACTAACCAATGTCCTAAAAGGAAAGGAAGTGACAGAATCTAACCTTCATGAATTGCCATACTTACAAGCAACAGTGAAAGAGACGCTAAGGTTGCACACTCCAATACCATTGTTGGTGCCACATATGAACCTGGAAGAAGCAAAGCTGGGAGGATACACCATTCCAAAGGAATCCAAGGTGGTGGTCAATGCATGGTGGCTAGCAAACAACCCTGAGTGGTGGAAAAATCCAGAGGAGTTTAGACCAGAGAGGTTCTTTCAAGAAGAAAGTGGCATAGAAGCTGTTGCAGCAGGGAAAGTGGATTACCGATTCTTACCATTTGGAGTTGGAAGGAGGAGTTGTCCAGGTATTGTTTTGGCAATGCCAATCTTAGGGCTCATCGTTGCCAAATTAGTTTCAAAGTTTGAAATGAAACCTCCAAAGGGAATAGAGAAGATCGATGTCGGTGAGAAAGGAGGTCAGTTTAGTCTACACATTGCAAACCACTCAACTGTGGTATTTGAGCCCATAGTGGCTTAG 1581 43.07 MASSAFLSLCTMVVVSLVTKFIFPMSPIAFGVTIFLLPLLTYIISSMAFSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASFTKRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGIEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEDEMDFVVRDLKSNEKFQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATQFNSKRSQLAQSFEYNYGDFIPLLRPFLRVYLNKCRDLQSRRLDFFNKNYVEKRRKIMAANGDKHKISCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPDIQHKIREELTNVLKGKEVTESNLHELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFQEESGIEAVAAGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVSKFEMKPPKGIEKIDVGEKGGQFSLHIANHSTVVFEPIVA 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38606283 38607957 + Lag0006178.1 Lac6g2209 611978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2209 526 Gene3D Cytochrome P450 48 520 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 106 127 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 82 101 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac6g2209 526 FunFam Trans-cinnamate 4-monooxygenase 44 518 - -
Lac6g2209 526 SUPERFAMILY Cytochrome P450 54 508 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 Pfam Cytochrome P450 54 514 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 37 524 - GO:0004497(PANTHER)
Lac6g2209 526 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac6g2209 526 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2202 Lac-Chr6:38528934 Lac6g2209 Lac-Chr6:38606283 9.40E-292 dispersed
Lac6g2209 Lac-Chr6:38606283 Lac9g2324 Lac-Chr9:42579470 2.90E-184 dispersed
Lac6g2207 Lac-Chr6:38596364 Lac6g2209 Lac-Chr6:38606283 1.30E-293 proximal
Lac6g2209 Lac-Chr6:38606283 Lac6g2210 Lac-Chr6:38619470 1.30E-256 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2209 K00487 - csv:105434566 989.949