Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2214 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCTCCTCCGCCGCCGCGCCTAATTCCTGCGAAGGTGGATTGGAGAAGAAGGTCATAAATCCAGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAGGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGCCCAAATCCCAAACTACCCAAATCTTCCTTCCAAGTTATTATGTTTGCTTCATAATGTAACATTACATGCTGACCCAGAAACAGATGAAGTATATGCTCAAATGACCCTACAACCAGTTCCCTCTTTTGACAAGGAGGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGTTTCTCCGTACCACGCCGTGCTGCAGAGAAGATCTTCCCCACTCTTGATTTCTCAATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTACATGATACTGTATGGACTTTCCGTCACATATATCGAGGACAACCGAAACGTCATTTGCTGACAACCGGTTGGAGCTTGTTTGTTAGTGGAAAGAGGCTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAACAGGCAACCGACAAACCTATCATCATCAGTGTTGTCAAGTGATAGTATGCACATTGGTATTCTTGCTGCTGCTGCCCATGCTGCTGCAAACAACAGCCCTTTCACCGTCTTCTACAACCCGAGAGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATACTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGTATGCGCTTTAGGATGATGTTCGAAACGGAAGAGTCTGGAACAAGAAGGTACATGGGCACTATCACAGGCATAAGTGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGTTGGGATGAGTCGACTGGAGGAGAAAGGCGAAACCGAGTCTCAATATGGGAGATTGAACCTGTAATTGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCTAAACGTCCAAGGCAACCGGGAATGCCAGATGATGACTCCTCGGATTTGGACGGTATATTTAAACGAACAATGTTTGGTGACGATTTCTGCATGAAAGATCCCCAAGGATATCCCGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCGCTCTCGAATTCAATGCAGCCAAATTACATGCATTCGTTTTCCGGGTCTATGCTTCCCAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGCTTGCCAAATACACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGATACTTTCTCAAGCTCAGCAGTTAGATCAGCTACCTAAGATACCATCGAGTATGAACTCATTGGGGTCCGTTGTGCAACCTCCACAACAGTTGGATGATATGTCTCAGCAGACACGGCAGAATTTGATAAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATTATGCAGCAGCCTCATGCTAATGGGATCCTACAGCAGCAAACCTCTTTGCAAAACCAGCAGCTTCAGAGAAGCCTCCCTCAGAACCTGCAAATGCAGCAGCATCAGCAAATTTTGGGTCAGAATCAACAGCAAAATATGAATCCGTCCCCGCTCCCGGATCAGTTAAATCATCAGTTGCAAATGTCGGATAATCAAGTTCAAATGCAGATGTTGCAGAAGCTTCAGCAGCAGCAGCAAACACTTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTCACCCAACTCCCGGAACAGCAGAGACAGATGGTAGATGTGTCCCAAAGCTTTTCCAGGTCCATGTCGTCCAACCAAATGCTCGACATGCCTCAATCTGCCCCAGCTCCAGTTCCTCCATCAAATGCTTTACCACAGCAGGCAGCGAAAAGCAATGGCCAGACAAATAACCGATTCTCGAATCAGCATTTGCAGCCGAAACTTCCACAACTGCAGCAACCAACTACATCTGCTGTACTTTCTGATATGTCTAGGCCAATGGGGATTCCTCCTACCCAAACAAACAATCAACTCTCTGCAGCTACTAGTAGTGTAATAACAGGAACAGCAGGGGCTGGCCAATCTGGAATCACCGACGACATACCATCTTGCTCCACATCACCTTCCACGAACAACTGTCCAAGTCTGGTTCAACCGGTAACTAATGGAAGGGTTCATCGAAGCACGGGGTTGGTTGAGGATGTTGCTCAATCTACTGCAACAATCTTCAGTGCAAATACCTTGGATACCATGTCACCAAATGCCAACTTAGTTAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAATCATGGAATTTTTGCACAACAAACTTTCTTGAACAATGCTGTTGCACAAACGGATTTCTTGGACACGTCTTCCTCCACAACCTCGGCTTGCCTTTCTCAGAACGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTGTTTAGAGATGGTGCTCAGGATTTGGAAGTACCAACAGATCTCCATAACATTCCGTACGGGACTAATGTCGACGGACAATTGGTAGCGCAGTTAAACTCCGATCCTTTGTTAAACAAGGGCATTGGAGGATTGGGGAAGGATTTCTCCAATAATTTCTCTTCTGGGGGAATGCTAGCCACTTACGATGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCACAATCATTTGGTATTCCAGACATGACATTTAATTCTATGGATTCAACGATAAACGATAGCGCCTTCTTGAATAGAAACCAATGGGCTCCTCCGCCTCCGTTCCCGCGTATGCGAACTTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACTCGTTACTCGGGTTATGATGAGCTAAAACAAGACCTGGCCCGTAGGTTCGGTATCGAGGGACAGTTAGAGGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTGGATCATGAGAATGATGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTCGGGAACGGGGTCCTACCGAACCAAGCCTGCAGTAGCTCAGATGGTGGAAATGCTTAA 3330 46.28 MKTPANGAAGAASSAAAPNSCEGGLEKKVINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKEALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLPNTQIPQSNNIQFNAQRILSQAQQLDQLPKIPSSMNSLGSVVQPPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHANGILQQQTSLQNQQLQRSLPQNLQMQQHQQILGQNQQQNMNPSPLPDQLNHQLQMSDNQVQMQMLQKLQQQQQTLLAQQSALQPAQLTQLPEQQRQMVDVSQSFSRSMSSNQMLDMPQSAPAPVPPSNALPQQAAKSNGQTNNRFSNQHLQPKLPQLQQPTTSAVLSDMSRPMGIPPTQTNNQLSAATSSVITGTAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVTNGRVHRSTGLVEDVAQSTATIFSANTLDTMSPNANLVKDLPQKTAVKPSLNISKNQNHGIFAQQTFLNNAVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFRDGAQDLEVPTDLHNIPYGTNVDGQLVAQLNSDPLLNKGIGGLGKDFSNNFSSGGMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDSAFLNRNQWAPPPPFPRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLPNQACSSSDGGNA 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38709954 38717036 - Lag0006183.1 Lac6g2214 611983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2214 1109 MobiDBLite consensus disorder prediction 1 21 - -
Lac6g2214 1109 Pfam Auxin response factor 263 346 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac6g2214 1109 MobiDBLite consensus disorder prediction 497 520 - -
Lac6g2214 1109 SUPERFAMILY CAD & PB1 domains 1010 1076 - -
Lac6g2214 1109 MobiDBLite consensus disorder prediction 676 705 - -
Lac6g2214 1109 Pfam AUX/IAA family 997 1082 IPR033389 -
Lac6g2214 1109 SUPERFAMILY DNA-binding pseudobarrel domain 126 266 IPR015300 -
Lac6g2214 1109 Gene3D - 993 1086 - -
Lac6g2214 1109 FunFam Auxin response factor 301 372 - -
Lac6g2214 1109 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677(InterPro)
Lac6g2214 1109 ProSiteProfiles PB1 domain profile. 997 1082 IPR053793 -
Lac6g2214 1109 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 1088 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac6g2214 1109 FunFam Auxin response factor 993 1086 - -
Lac6g2214 1109 Pfam B3 DNA binding domain 137 239 IPR003340 GO:0003677(InterPro)
Lac6g2214 1109 SMART B3_2 137 239 IPR003340 GO:0003677(InterPro)
Lac6g2214 1109 MobiDBLite consensus disorder prediction 635 663 - -
Lac6g2214 1109 Gene3D - 135 238 IPR015300 -
Lac6g2214 1109 MobiDBLite consensus disorder prediction 635 705 - -
Lac6g2214 1109 CDD B3_DNA 136 228 IPR003340 GO:0003677(InterPro)
Lac6g2214 1109 Gene3D - 301 371 - -
Lac6g2214 1109 FunFam Auxin response factor 135 239 - -
Lac6g2214 1109 MobiDBLite consensus disorder prediction 568 596 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0024 Lac-Chr3:237205 Lac6g2214 Lac-Chr6:38709954 7.30E-17 dispersed
Lac6g2214 Lac-Chr6:38709954 Lac6g3115 Lac-Chr6:48549666 2.00E-243 dispersed
Lac6g2214 Lac-Chr6:38709954 Lac1g3550 Lac-Chr1:54711541 1.40E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24054 PF02309 AUX_IAA 4.00E-07 CL0072 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2214 - - - 0.0