Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac6g2214 | ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCTCCTCCGCCGCCGCGCCTAATTCCTGCGAAGGTGGATTGGAGAAGAAGGTCATAAATCCAGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAGGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGCCCAAATCCCAAACTACCCAAATCTTCCTTCCAAGTTATTATGTTTGCTTCATAATGTAACATTACATGCTGACCCAGAAACAGATGAAGTATATGCTCAAATGACCCTACAACCAGTTCCCTCTTTTGACAAGGAGGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGTTTCTCCGTACCACGCCGTGCTGCAGAGAAGATCTTCCCCACTCTTGATTTCTCAATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTACATGATACTGTATGGACTTTCCGTCACATATATCGAGGACAACCGAAACGTCATTTGCTGACAACCGGTTGGAGCTTGTTTGTTAGTGGAAAGAGGCTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGGCGAGCGAACAGGCAACCGACAAACCTATCATCATCAGTGTTGTCAAGTGATAGTATGCACATTGGTATTCTTGCTGCTGCTGCCCATGCTGCTGCAAACAACAGCCCTTTCACCGTCTTCTACAACCCGAGAGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATACTACAAGGCAGTGTCTGCAAACCAAATATCACTCGGTATGCGCTTTAGGATGATGTTCGAAACGGAAGAGTCTGGAACAAGAAGGTACATGGGCACTATCACAGGCATAAGTGATCTTGATCCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGTTGGGATGAGTCGACTGGAGGAGAAAGGCGAAACCGAGTCTCAATATGGGAGATTGAACCTGTAATTGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCTAAACGTCCAAGGCAACCGGGAATGCCAGATGATGACTCCTCGGATTTGGACGGTATATTTAAACGAACAATGTTTGGTGACGATTTCTGCATGAAAGATCCCCAAGGATATCCCGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCGCTCTCGAATTCAATGCAGCCAAATTACATGCATTCGTTTTCCGGGTCTATGCTTCCCAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGCTTGCCAAATACACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGATACTTTCTCAAGCTCAGCAGTTAGATCAGCTACCTAAGATACCATCGAGTATGAACTCATTGGGGTCCGTTGTGCAACCTCCACAACAGTTGGATGATATGTCTCAGCAGACACGGCAGAATTTGATAAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATTATGCAGCAGCCTCATGCTAATGGGATCCTACAGCAGCAAACCTCTTTGCAAAACCAGCAGCTTCAGAGAAGCCTCCCTCAGAACCTGCAAATGCAGCAGCATCAGCAAATTTTGGGTCAGAATCAACAGCAAAATATGAATCCGTCCCCGCTCCCGGATCAGTTAAATCATCAGTTGCAAATGTCGGATAATCAAGTTCAAATGCAGATGTTGCAGAAGCTTCAGCAGCAGCAGCAAACACTTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTCACCCAACTCCCGGAACAGCAGAGACAGATGGTAGATGTGTCCCAAAGCTTTTCCAGGTCCATGTCGTCCAACCAAATGCTCGACATGCCTCAATCTGCCCCAGCTCCAGTTCCTCCATCAAATGCTTTACCACAGCAGGCAGCGAAAAGCAATGGCCAGACAAATAACCGATTCTCGAATCAGCATTTGCAGCCGAAACTTCCACAACTGCAGCAACCAACTACATCTGCTGTACTTTCTGATATGTCTAGGCCAATGGGGATTCCTCCTACCCAAACAAACAATCAACTCTCTGCAGCTACTAGTAGTGTAATAACAGGAACAGCAGGGGCTGGCCAATCTGGAATCACCGACGACATACCATCTTGCTCCACATCACCTTCCACGAACAACTGTCCAAGTCTGGTTCAACCGGTAACTAATGGAAGGGTTCATCGAAGCACGGGGTTGGTTGAGGATGTTGCTCAATCTACTGCAACAATCTTCAGTGCAAATACCTTGGATACCATGTCACCAAATGCCAACTTAGTTAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAATCATGGAATTTTTGCACAACAAACTTTCTTGAACAATGCTGTTGCACAAACGGATTTCTTGGACACGTCTTCCTCCACAACCTCGGCTTGCCTTTCTCAGAACGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTGTTTAGAGATGGTGCTCAGGATTTGGAAGTACCAACAGATCTCCATAACATTCCGTACGGGACTAATGTCGACGGACAATTGGTAGCGCAGTTAAACTCCGATCCTTTGTTAAACAAGGGCATTGGAGGATTGGGGAAGGATTTCTCCAATAATTTCTCTTCTGGGGGAATGCTAGCCACTTACGATGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCACAATCATTTGGTATTCCAGACATGACATTTAATTCTATGGATTCAACGATAAACGATAGCGCCTTCTTGAATAGAAACCAATGGGCTCCTCCGCCTCCGTTCCCGCGTATGCGAACTTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACTCGTTACTCGGGTTATGATGAGCTAAAACAAGACCTGGCCCGTAGGTTCGGTATCGAGGGACAGTTAGAGGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTGGATCATGAGAATGATGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTCGGGAACGGGGTCCTACCGAACCAAGCCTGCAGTAGCTCAGATGGTGGAAATGCTTAA | 3330 | 46.28 | MKTPANGAAGAASSAAAPNSCEGGLEKKVINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKEALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDFSMQPPAQELVAKDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLPNTQIPQSNNIQFNAQRILSQAQQLDQLPKIPSSMNSLGSVVQPPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHANGILQQQTSLQNQQLQRSLPQNLQMQQHQQILGQNQQQNMNPSPLPDQLNHQLQMSDNQVQMQMLQKLQQQQQTLLAQQSALQPAQLTQLPEQQRQMVDVSQSFSRSMSSNQMLDMPQSAPAPVPPSNALPQQAAKSNGQTNNRFSNQHLQPKLPQLQQPTTSAVLSDMSRPMGIPPTQTNNQLSAATSSVITGTAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVTNGRVHRSTGLVEDVAQSTATIFSANTLDTMSPNANLVKDLPQKTAVKPSLNISKNQNHGIFAQQTFLNNAVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFRDGAQDLEVPTDLHNIPYGTNVDGQLVAQLNSDPLLNKGIGGLGKDFSNNFSSGGMLATYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDSAFLNRNQWAPPPPFPRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLPNQACSSSDGGNA | 1109 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 38709954 | 38717036 | - | Lag0006183.1 | Lac6g2214 | 611983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac6g2214 | 1109 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lac6g2214 | 1109 | Pfam | Auxin response factor | 263 | 346 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac6g2214 | 1109 | MobiDBLite | consensus disorder prediction | 497 | 520 | - | - | |
Lac6g2214 | 1109 | SUPERFAMILY | CAD & PB1 domains | 1010 | 1076 | - | - | |
Lac6g2214 | 1109 | MobiDBLite | consensus disorder prediction | 676 | 705 | - | - | |
Lac6g2214 | 1109 | Pfam | AUX/IAA family | 997 | 1082 | IPR033389 | - | |
Lac6g2214 | 1109 | SUPERFAMILY | DNA-binding pseudobarrel domain | 126 | 266 | IPR015300 | - | |
Lac6g2214 | 1109 | Gene3D | - | 993 | 1086 | - | - | |
Lac6g2214 | 1109 | FunFam | Auxin response factor | 301 | 372 | - | - | |
Lac6g2214 | 1109 | ProSiteProfiles | B3 DNA-binding domain profile. | 137 | 239 | IPR003340 | GO:0003677(InterPro) | |
Lac6g2214 | 1109 | ProSiteProfiles | PB1 domain profile. | 997 | 1082 | IPR053793 | - | |
Lac6g2214 | 1109 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 30 | 1088 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac6g2214 | 1109 | FunFam | Auxin response factor | 993 | 1086 | - | - | |
Lac6g2214 | 1109 | Pfam | B3 DNA binding domain | 137 | 239 | IPR003340 | GO:0003677(InterPro) | |
Lac6g2214 | 1109 | SMART | B3_2 | 137 | 239 | IPR003340 | GO:0003677(InterPro) | |
Lac6g2214 | 1109 | MobiDBLite | consensus disorder prediction | 635 | 663 | - | - | |
Lac6g2214 | 1109 | Gene3D | - | 135 | 238 | IPR015300 | - | |
Lac6g2214 | 1109 | MobiDBLite | consensus disorder prediction | 635 | 705 | - | - | |
Lac6g2214 | 1109 | CDD | B3_DNA | 136 | 228 | IPR003340 | GO:0003677(InterPro) | |
Lac6g2214 | 1109 | Gene3D | - | 301 | 371 | - | - | |
Lac6g2214 | 1109 | FunFam | Auxin response factor | 135 | 239 | - | - | |
Lac6g2214 | 1109 | MobiDBLite | consensus disorder prediction | 568 | 596 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0024 | Lac-Chr3:237205 | Lac6g2214 | Lac-Chr6:38709954 | 7.30E-17 | dispersed | |
Lac6g2214 | Lac-Chr6:38709954 | Lac6g3115 | Lac-Chr6:48549666 | 2.00E-243 | dispersed | |
Lac6g2214 | Lac-Chr6:38709954 | Lac1g3550 | Lac-Chr1:54711541 | 1.40E-167 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24054 | PF02309 | AUX_IAA | 4.00E-07 | CL0072 | Lac | TF |
Pathway information
