Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac6g2235 | AGGGTGAAACTTGCTTCTTCTACTAAGGTTATATCTTCCATTTTAGCTACTTGGCTGCTTCCGGAAGGAGAGGCTGGGAATCGAGAAGGCCGGCGCTGCGACGGCGACGGAGAACAGAGAAGGACGGTCACCGCCCACCGCCCACCGCCTTGCCTTAAACGCGCCGTTTTACCAGATTTTTCGACTATGAGTTCATACAAGGGCTCCCCGTACGGACGACGGAGTGATGTGGAGTCCGGTAGCAGTAATTCCGGCGAGCCGGAGGAGGAAGAGTCATCTAATCCTTTCGAAATTCCCAGAACTAAGCATGCTTCTGTTGACAGACTCCGCCGCTGGAGACAAGCTGCACTAGTGTTAAATGCTTCTCGTCGATTTCGGTATACTTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGGAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTCAAAGCGGCTGGGGATCGTCTAACAGGACCTACAACAACAGAGACTTCAAATGGTGATTTTTCTGTTGGGCAAGATCAACTGGCTGTATTGGTAAAGGATCGTAATGTTGGAGTTCTGGAGCAGTATGGAGGGGTTAAAGGGGTAGCAGATATGTTACAATCAAATTTAGAGAAGGGGATAATTGGTGATGAATCTGATTTACTGAAACGGAGAAACACATATGGTTCAAACACATATCCTCAGAAACCAGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCCTGGCAAGATCTTACATTGATCATATTGATGATAGCTGCAGTTGCTTCGTTGGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTGGTAACAGCTATAAGTGACTACCGACAATCTCTTCAATTTCAGAACTTGAATAAGGAAAAGAGGAACATACAAGTGGAGGTTGTTAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGAGATTGTTGTTGGTGATGTCATACCACTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATTTCTGGACACTCACTTGCCATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTCCAAAAGCATGCCAAAGAACCTTTCCTGATGTCTGGATGCAAAGTTGCTGATGGTAGTGGCACCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTAATGGCAAGTATTTCTGAAGACAACGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCTTTTGCTGTATTGGTAGTGCTCCTCGCAAGGTATTTCACTGGTCACACCAAAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGTCGTGCCGTTGATGGGGCCATCAAAATTGTCACTATTGCGGTGACCATTGTTGTGGTTGCTGTGCCTGAAGGGCTTCCACTAGCTGTAACATTAACTCTTGCTTACTCGATGAGAAAGATGATGGCAGACAAGGCACTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACAACTATTTGTAGTGATAAGACTGGAACCTTAACTATAAATCAGATGACCATTGTTGAGGCTTATGTTGGTGGGAAGAAGATTGATCCGCCAGAGAAGAAGTCAGAGTTGTCTCCCATGTTACACTCCATACTTGTCGAAGGAATTGCTCTGAACTCAAATGGCAGTGTATTTGTGCCTGAGAGTGGTGGAGAGGCAGAGGTTACGGGTTCACCTACAGAAAAGGCTATTCTTAATTGGGGTATCAAGATGGGAATGAATTTTGAAGCACTTAGATCAGAATCTGCAATTCTTCATGTTTTCCCCTTCAGCTCCGATAAAAAACGTGGTGGTGTTGCAGGGCAACGGGATAATGAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTCTTAGCATCATGCACAAAGTACATGGATGAACATGATCTTTCTGTCGAATTAGATGAAGATAAGATGAAGTATTTCAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCTATAGCATATAGATCTTTTGAACCTGAGAATGTTCCTGATGTTGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGATGACCTTGTTTTGTTGGCCATAGTTGGTTTGAAGGACCCCTGTCGACCGGGAGTAAAAGATGCAGTACGACTTTGTCAAAAGGCTGGTGTTAAGGTACGCATGGTCACTGGTGATAATGTCCAGACTGCTAGAGCTATTGCATTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAACCTTATTGAGGGAAAAGCATTCCGTGCCCTCTCTGATGCCCAAAGAGAAGAAGTTGCTGAAAAAATATCAGTGATGGGTCGATCTTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCATTGAGAAAGAGAGGACATGTAGTTGCTGTAACTGGAGATGGTACAAATGATGCTCCTGCATTACATGAGGCAGATATTGGTCTTGCAATGGGTATTCAGGGAACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTGGATGACAACTTTGCTTCAGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTCACTGTTAATGTTGCAGCTCTCATTATCAATGTCGTGGCAGCAGTATCCTCCGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTCGGAGCTTTAGCGTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGGTCGCCAGTTGGTAGAAGAGAACCTCTTATAACAAATATCATGTGGAGGAATCTGCTGATACAGGCATTTTATCAAGTCTCCGTGCTGCTTGTCCTCAACTTTCGTGGTCGAAGTTTGCTTCATTTGAACCACTCTCAAGTAGAAGCTAACAAAGTGAAGAATACTTTGATTTTCAATGCATTTGTGCTTTGCCAGATTTTCAATGAATTCAATGCTCGAAAACCTGATGAGAAAAATATATTCAAAGGAGTCACTAAAAATTACCTATTTATCGGGATCATTGCAATTACTGTTGTCCTCCAGGTGATAATAATCGAGTTTCTTGGGAAATTCACATCCACGGTCAGGCTTAATTGGAAATATTGGCTTATTTCCATTATCATTGGTGTCATCAGTTGGCCTCTGGCTCTCCTTGGGAAATTCATACCTGTTCCTGAAACTCCCTTCCATGTGCTCATTATCAGAATGTTCCGTAAACGACAACCCGGGGGAGCTTAA | 3402 | 43.65 | RVKLASSTKVISSILATWLLPEGEAGNREGRRCDGDGEQRRTVTAHRPPPCLKRAVLPDFSTMSSYKGSPYGRRSDVESGSSNSGEPEEEESSNPFEIPRTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKAAGDRLTGPTTTETSNGDFSVGQDQLAVLVKDRNVGVLEQYGGVKGVADMLQSNLEKGIIGDESDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYEIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHAKEPFLMSGCKVADGSGTMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLLARYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTINQMTIVEAYVGGKKIDPPEKKSELSPMLHSILVEGIALNSNGSVFVPESGGEAEVTGSPTEKAILNWGIKMGMNFEALRSESAILHVFPFSSDKKRGGVAGQRDNEVHIHWKGAAEIVLASCTKYMDEHDLSVELDEDKMKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDVEEQLSKWALPEDDLVLLAIVGLKDPCRPGVKDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKAFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVSVLLVLNFRGRSLLHLNHSQVEANKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVVLQVIIIEFLGKFTSTVRLNWKYWLISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRQPGGA | 1133 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 38981690 | 39018008 | - | Lag0006204.1 | Lac6g2235 | 612004 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac6g2235 | 1133 | FunFam | Calcium-transporting ATPase | 250 | 307 | - | - | |
| Lac6g2235 | 1133 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 93 | 136 | IPR024750 | GO:0005516(InterPro) | |
| Lac6g2235 | 1133 | NCBIfam | HAD-IC family P-type ATPase | 287 | 459 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g2235 | 1133 | NCBIfam | HAD-IC family P-type ATPase | 482 | 565 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g2235 | 1133 | NCBIfam | HAD-IC family P-type ATPase | 816 | 929 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac6g2235 | 1133 | CDD | P-type_ATPase_Ca_PMCA-like | 224 | 982 | - | - | |
| Lac6g2235 | 1133 | Pfam | E1-E2 ATPase | 319 | 520 | - | - | |
| Lac6g2235 | 1133 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 549 | 746 | IPR023299 | GO:0000166(InterPro) | |
| Lac6g2235 | 1133 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
| Lac6g2235 | 1133 | SUPERFAMILY | HAD-like | 540 | 954 | IPR036412 | - | |
| Lac6g2235 | 1133 | Gene3D | - | 539 | 894 | IPR023214 | - | |
| Lac6g2235 | 1133 | PRINTS | P-type cation-transporting ATPase superfamily signature | 742 | 753 | - | - | |
| Lac6g2235 | 1133 | PRINTS | P-type cation-transporting ATPase superfamily signature | 873 | 885 | - | - | |
| Lac6g2235 | 1133 | PRINTS | P-type cation-transporting ATPase superfamily signature | 849 | 868 | - | - | |
| Lac6g2235 | 1133 | PRINTS | P-type cation-transporting ATPase superfamily signature | 542 | 556 | - | - | |
| Lac6g2235 | 1133 | PRINTS | P-type cation-transporting ATPase superfamily signature | 764 | 774 | - | - | |
| Lac6g2235 | 1133 | PRINTS | P-type cation-transporting ATPase superfamily signature | 366 | 380 | - | - | |
| Lac6g2235 | 1133 | Gene3D | - | 223 | 418 | - | - | |
| Lac6g2235 | 1133 | Gene3D | - | 250 | 1101 | - | - | |
| Lac6g2235 | 1133 | SUPERFAMILY | Calcium ATPase, transduction domain A | 319 | 415 | IPR008250 | - | |
| Lac6g2235 | 1133 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 544 | 550 | IPR018303 | - | |
| Lac6g2235 | 1133 | FunFam | Calcium-transporting ATPase | 552 | 749 | - | - | |
| Lac6g2235 | 1133 | FunFam | Calcium-transporting ATPase | 743 | 894 | - | - | |
| Lac6g2235 | 1133 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 192 | 1112 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lac6g2235 | 1133 | Gene3D | - | 104 | 159 | - | - | |
| Lac6g2235 | 1133 | PANTHER | CATION TRANSPORTING ATPASE | 159 | 1112 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lac6g2235 | 1133 | Coils | Coil | 131 | 151 | - | - | |
| Lac6g2235 | 1133 | SMART | Cation_ATPase_N_a_2 | 198 | 272 | IPR004014 | - | |
| Lac6g2235 | 1133 | Pfam | Cation transporter/ATPase, N-terminus | 199 | 267 | IPR004014 | - | |
| Lac6g2235 | 1133 | PRINTS | Sodium/potassium-transporting ATPase signature | 285 | 305 | - | - | |
| Lac6g2235 | 1133 | PRINTS | Sodium/potassium-transporting ATPase signature | 660 | 678 | - | - | |
| Lac6g2235 | 1133 | PRINTS | Sodium/potassium-transporting ATPase signature | 535 | 556 | - | - | |
| Lac6g2235 | 1133 | Pfam | haloacid dehalogenase-like hydrolase | 540 | 863 | - | - | |
| Lac6g2235 | 1133 | Pfam | Cation transporting ATPase, C-terminus | 934 | 1110 | IPR006068 | - | |
| Lac6g2235 | 1133 | FunFam | Calcium-transporting ATPase | 104 | 160 | - | - | |
| Lac6g2235 | 1133 | Gene3D | - | 552 | 749 | IPR023299 | GO:0000166(InterPro) | |
| Lac6g2235 | 1133 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 396 | 566 | - | - | |
| Lac6g2235 | 1133 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 199 | 1112 | IPR023298 | - | |
| Lac6g2235 | 1133 | SFLD | C1.7: P-type atpase like | 524 | 901 | - | - | |
| Lac6g2235 | 1133 | MobiDBLite | consensus disorder prediction | 62 | 89 | - | - | |
| Lac6g2235 | 1133 | FunFam | Calcium-transporting ATPase | 866 | 1114 | - | - | |
| Lac6g2235 | 1133 | FunFam | Calcium-transporting ATPase | 297 | 418 | - | - | |
| Lac6g2235 | 1133 | SFLD | p-type atpase | 524 | 901 | IPR044492 | - | |
| Lac6g2235 | 1133 | MobiDBLite | consensus disorder prediction | 25 | 101 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g1017 | Lac-Chr3:8271029 | Lac6g2235 | Lac-Chr6:38981690 | 1.10E-15 | dispersed | |
| Lac4g3082 | Lac-Chr4:48935985 | Lac6g2235 | Lac-Chr6:38981690 | 0.00E+00 | dispersed | |
| Lac6g2235 | Lac-Chr6:38981690 | Lac8g2014 | Lac-Chr8:38602625 | 7.00E-260 | dispersed | |
| Lac6g2235 | Lac-Chr6:38981690 | Lac2g0394 | Lac-Chr2:2889004 | 1.50E-254 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac6g2235 | K01537 | - | csv:101211703 | 1896.71 |