Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2250 ATGCCACCCACGTGGAATAAAAAAAAAAAAGAAAAAGAAAAAGAAAAATGGCACTCGTTTTTCGCCCCTATAAAAACTCCCAGATTCTGCACCTGTTTACAAGAAAGCCATTCCTCTCCATCGATAGAGTCGCAATCGGAATCGGAATCCTCCATCGCCGCCGTCTCCTCCGGTCCTCCGCCGATGGAGAATATTCTCGACGAATATCAGAACTATTGGGAAACGAATATGTTTCTGCAGACGGAAGAGTTCGACAGTTGGGGACTGGACGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCGGACGGAACGCCGTCGTCCTTAGAGGCTTCCAAGAACATCTTATCGGAGAGGAATCGGAGAAAGAAGCTTAACGATAGGCTTCTCGCTCTCAGAGCTGTGGTCCCTAATATTACCAAAATGGACAAGGCGTCGATAATCAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGAGCAAGAGAAGAGAATTGAAGCAGAGATCTCAGATCTTGAATCAGGCAAAATCAACAACAGATCAACAACAACAACAAATCAATCGATCGGCGAAAACGGCGACCAAATCTCAACGAAGAGGAGAACGAATCGGCACATATCCGACGCGCCGTACACTTTCCCGATCGAAGTACTCGATTTGAGTGTGAATTACATGGGAGAGAAGACGATCGTGGTGAGCTTGACGTGTGGACGAAGAGGCGACACGATATTGAAGGTGTGCCAAGTGATCGAATCGCTGAAGCTCAGAATCATAACCGCTAACATCACCGTCGTTGCGAACAGGCTTTTGAACACCCTCTTCATTGAGGCCACACCGCCTCCGATGCTAAAGTCAGAAAACCGAGAAGGAACTAGGAAGAATTCGGAGGTGTTGTGGGACGAACCAGGCGAAACCGGGGCGATCCGGGGCATCACGGGTCGAAAGGAGGTGACCGAGCTCGACCCGCGCAAGCGGGCCGAATGA 984 49.39 MPPTWNKKKKEKEKEKWHSFFAPIKTPRFCTCLQESHSSPSIESQSESESSIAAVSSGPPPMENILDEYQNYWETNMFLQTEEFDSWGLDEAFYGSYDSSSPDGTPSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELREQEKRIEAEISDLESGKINNRSTTTTNQSIGENGDQISTKRRTNRHISDAPYTFPIEVLDLSVNYMGEKTIVVSLTCGRRGDTILKVCQVIESLKLRIITANITVVANRLLNTLFIEATPPPMLKSENREGTRKNSEVLWDEPGETGAIRGITGRKEVTELDPRKRAE 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39503693 39509670 - Lag0006219.1 Lac6g2250 612019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2250 327 MobiDBLite consensus disorder prediction 36 60 - -
Lac6g2250 327 SMART finulus 115 164 IPR011598 GO:0046983(InterPro)
Lac6g2250 327 MobiDBLite consensus disorder prediction 305 327 - -
Lac6g2250 327 MobiDBLite consensus disorder prediction 177 196 - -
Lac6g2250 327 MobiDBLite consensus disorder prediction 177 198 - -
Lac6g2250 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 59 284 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac6g2250 327 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 106 178 - -
Lac6g2250 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 173 IPR036638 GO:0046983(InterPro)
Lac6g2250 327 Coils Coil 148 175 - -
Lac6g2250 327 Pfam Helix-loop-helix DNA-binding domain 115 159 IPR011598 GO:0046983(InterPro)
Lac6g2250 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983(InterPro)
Lac6g2250 327 MobiDBLite consensus disorder prediction 36 57 - -
Lac6g2250 327 Gene3D - 107 175 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0353 Lac-Chr3:2623111 Lac6g2250 Lac-Chr6:39503693 2.40E-61 dispersed
Lac6g1040 Lac-Chr6:9489029 Lac6g2250 Lac-Chr6:39503693 2.90E-12 dispersed
Lac6g2250 Lac-Chr6:39503693 Lac9g2627 Lac-Chr9:44764774 3.20E-16 dispersed
Lac6g2250 Lac-Chr6:39503693 Lac2g0808 Lac-Chr2:6378004 1.20E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24055 PF00010 HLH 1.20E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2250 - - - 0.0