Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2273 ATGGGGGTGAATTTCCAGCGCACGGTTCTTGTGTTTTTTGCGCTTCTTGTTGTTGGGAAGGCGGAAATTTACATTGTCACCATTGACGGAGAACCTATTGTGAGTTACAAAGGTGATCTCGATGGATTTGAAGCCACAGCATTGGAATCTGATGAAAAGATCGACCCTACCAGTGAAATTGTGACATCCTATGCTCGTCACCTTGAAAATAAACATGACATGCTTCTTGGGATGTTGTTTGAGAGAGGATCCTTCAAGAAGCTCTATAGTTATAAGCATCTCATCAATGGATTTGCAGTTGACATCTCACCTGAACAGGCAGAGATTCTAAGACATACACCAATTGTAAAATCTGTTGAGAGGGATTGGAAGGTTAGGAAACTAACAACGCACACACCAGAGTTTTTGGGCCTTCCAACTGGCGTATGGCCAACTGGTGGTGGCTTTGACAGGGCTGGAGAAGACATCGTGATTGGATTTGTGGACTCTGGGATTTATCCACATCATCCAAGTTTTGCTACATATAATACCGAACCTTTTGGGCCCTGTTCGAAGTATAAAGGGAAATGTGAAGTTGACCCCGACACCAAGAAGGATTTTTGCAATGGAAAGATTATTGGAGCCCAACATTTTGCAGAAGCTGCTAAAGCAGCTGGAGCATTTAACCCAGCTATTCATTTTGCATCTCCTTTGGATGGTGATGGACATGGAAGTCATACGGCAGCAATTGCAGCTGGAAATAACGGAATCCCTGTGAGAATGCATGGCTATGAATTTGGTAAAGCTAGTGGGATGGCTCCCCGTGCTAGAATTGCTGTATATAAGGCTCTCTACAGGATTTTTGGAGGATTTGTTGCTGATGTAGTTGCAGCTATTGATCAGGCTGTACATGATGGGGTCGATATTCTCAGTCTTTCCGTTGGGCCAAATAGTCCTCCTGCAACTACCAAGATCACGTATTTAAACCCTTTTGATGCTACCCTTCTTTCAGCTGTGAAGGCTGGTGTATTTGTTGCACAGGCTGCTGGAAATGGAGGACCATTTCCTAAAACTTTAGTGTCGTATAGTCCATGGATAGCAACTGTAGCAGCTGCAATCGATGACAGAAGATACAAAAACCATCTAAAACTTGGTAATGGAAAAATTTTGGCTGGACTTGGGTTATCACCTGCTACACATTTAAATCGAACATACACATTGGTCGCAGCTAATGACGTTCTGTTAGATTCTTCAGTAATGAAGTACAGCCCCTCTGACTGCCAAAGGCCTGAAGTTCTAAACAAACGATTGGTTGAAGGAAAAGTTTTACTTTGTGGTTATTCATTCAGTTTTGTTGTTGGTACCGCTTCAATCAAGAAGGTCTCTCAAACAGCAAAAGCCCTTGGTGCGGCTGGCTTTGTTCTTGCTGTTGAAAACATCTCTCCTGGAGCAAAATTTGACCCTGTTCCTGTTGGCATTCCTGGGATTCTCATAACTGATGTCAGCAAGTCGATGGATCTTATAGACTACTACAACACCTCAACACCCAGAGATTGGACGGGTCGGGTCAAGAGCTTTGATGCTGTGGGTAGCATTGGGGATGGTTTGATGCCTTTATTATACAAATCAGCTCCTGAGGTAGCATTGTTTTCTGCTCGTGGACCCAATATTAGAGACTTTAGCTTTCAGGATGCAGACCTTCTTAAACCAGATATTCTAGCTCCTGGTTCTTTGATATGGGCTGCTTGGTCTCCAAATGGAACGGACGAGCCGAACTATGTCGGAGAGGGATTTGCTATGATTTCTGGAACGAGCATGGCAGCACCGCATATAGCTGGTATAGCAGCTCTTGTAAAACAGAAGCATCCGAACTGGAGTCCTGCAGCCATCAAATCAGCTTTGATGACAACATCAACAACAATGGACAGAGCAGGAAGACCTCTTAAAGCACAACAATTTTCTGAAACAGAAGCCATGAAACTGGTAACTGCAACACCTTTCGATTATGGGAGTGGTCATGTAAACCCAAGAGCAGCACTGGATCCTGGACTCATCTTTGATGCAGGTTATGAAGATTACTTGGGATTCTTATGCACGACAGCGGGCATCAACGTTCACGAGATACACAACTATACAAAGACACCTTGCAACTTCACCATGGGCCATCCCTGGAATCTCAACAGTCCATCAATCACCATCGCCCATCTTGTGGGAACTCAGACTGTTACTCGCACAGTAACAAATGTAGCTGAGGAAGAAACCTATACAATTACTGCAAGAATGGACCCTGCTGTTGCCATAGAAACAAGTCCTCCAGCAATGACTTTACGATCCGGTTCGTCGAGAAAATTTTCAGTAAGTCTCACAGCTCGATCACTGACAGGAACATATAGTTTCGGCGAGGTTCTATTGAAGGGAAGTAGGGGGCACAAGGTTAGAATACCTGTAGTAGCCATGGGATACCAACGATGA 2451 44.19 MGVNFQRTVLVFFALLVVGKAEIYIVTIDGEPIVSYKGDLDGFEATALESDEKIDPTSEIVTSYARHLENKHDMLLGMLFERGSFKKLYSYKHLINGFAVDISPEQAEILRHTPIVKSVERDWKVRKLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFATYNTEPFGPCSKYKGKCEVDPDTKKDFCNGKIIGAQHFAEAAKAAGAFNPAIHFASPLDGDGHGSHTAAIAAGNNGIPVRMHGYEFGKASGMAPRARIAVYKALYRIFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKITYLNPFDATLLSAVKAGVFVAQAAGNGGPFPKTLVSYSPWIATVAAAIDDRRYKNHLKLGNGKILAGLGLSPATHLNRTYTLVAANDVLLDSSVMKYSPSDCQRPEVLNKRLVEGKVLLCGYSFSFVVGTASIKKVSQTAKALGAAGFVLAVENISPGAKFDPVPVGIPGILITDVSKSMDLIDYYNTSTPRDWTGRVKSFDAVGSIGDGLMPLLYKSAPEVALFSARGPNIRDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMISGTSMAAPHIAGIAALVKQKHPNWSPAAIKSALMTTSTTMDRAGRPLKAQQFSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTAGINVHEIHNYTKTPCNFTMGHPWNLNSPSITIAHLVGTQTVTRTVTNVAEEETYTITARMDPAVAIETSPPAMTLRSGSSRKFSVSLTARSLTGTYSFGEVLLKGSRGHKVRIPVVAMGYQR 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39899532 39907411 + Lag0006242.1 Lac6g2273 612042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2273 816 Gene3D - 690 813 - -
Lac6g2273 816 Gene3D Peptidase S8/S53 domain 155 686 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac6g2273 816 Pfam Fibronectin type-III domain 718 810 IPR041469 -
Lac6g2273 816 Gene3D - 368 533 - -
Lac6g2273 816 SUPERFAMILY Protease propeptides/inhibitors 85 126 - -
Lac6g2273 816 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 158 169 IPR023827 -
Lac6g2273 816 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 72 784 IPR045051 -
Lac6g2273 816 ProSitePatterns Serine proteases, subtilase family, serine active site. 596 606 IPR023828 -
Lac6g2273 816 FunFam Subtilisin-like protease SBT1.5 155 376 - -
Lac6g2273 816 SUPERFAMILY Subtilisin-like 128 677 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac6g2273 816 CDD PA_subtilisin_like 375 513 - -
Lac6g2273 816 CDD Peptidases_S8_3 129 632 IPR034197 -
Lac6g2273 816 Pfam Subtilase family 153 634 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lac6g2273 816 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 128 IPR037045 -
Lac6g2273 816 ProSiteProfiles Serine proteases, subtilase domain profile. 122 673 - -
Lac6g2273 816 PRINTS Subtilisin serine protease family (S8) signature 232 245 IPR015500 -
Lac6g2273 816 PRINTS Subtilisin serine protease family (S8) signature 153 172 IPR015500 -
Lac6g2273 816 PRINTS Subtilisin serine protease family (S8) signature 595 611 IPR015500 -
Lac6g2273 816 Pfam PA domain 397 492 IPR003137 -
Lac6g2273 816 Pfam Peptidase inhibitor I9 24 126 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1389 Lac-Chr10:12939452 Lac6g2273 Lac-Chr6:39899532 1.20E-127 dispersed
Lac6g2273 Lac-Chr6:39899532 Lac9g1818 Lac-Chr9:37984925 1.50E-94 dispersed
Lac6g2273 Lac-Chr6:39899532 Lac6g2278 Lac-Chr6:39944003 1.90E-94 proximal
Lac10g1390 Lac-Chr10:12967072 Lac6g2273 Lac-Chr6:39899532 3.30E-31 transposed
Lac1g3629 Lac-Chr1:55385447 Lac6g2273 Lac-Chr6:39899532 6.70E-191 transposed
Lac2g2679 Lac-Chr2:41234342 Lac6g2273 Lac-Chr6:39899532 9.40E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2273 - - - 0.0