Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2287 ATGGGTGAGGAGGCAATGGAGAAGGAGAAAGTAATAATGAGAGAAAACAAATTGCAAAGAAGCCATTTTGATGTGTTGGGACTTTGCTGTTCTTCAGAAGTCCCTTTGATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAAGACATCTCTGTCATTGTCCCTACAAGAACTCTCATTGTTGTCCATGATTCTCTCCTCATTTCCCAACTTCAAATTGTGAAAGCTCTAAATGAAGCAAGATTGGAAGCAAATGTACAATTAAATGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGCGGGTTGCTTCTAACGGCGTCGTTTCTGAAGTATGTGTACCACCCATTGCAGTGGCTGGCCGTCGCCGCCGTCGCCGCCGGCATCTTTCCGATTCTCTTAAAAGCCATTTCCGCCGTTCGCCACCTCAGGATCGACGTCAACATTCTTGCTATCATTGCTGTTGTGGGGACAATTGCTATGAATGACTACATGGAAGCTGGGAGTATAGTGTTTTTGTTTTCCATTGCTGAATGGCTTGAGTCAAGAGCAAGCCACAAGGCCAATGCTGCAATGTCCTCACTGATGAGCCTTGCCCCTCAAACAGCAACCATAGCTGAAACTGGAGAGATTGTGGATTCAAAAGAAGTGAAATTGAACACTGTTTTGGCTGTGAAGGCTGGAGAAGTTATTCCCATTGATGGAATTGTTGTGGAAGGAAAATGTGAAGTTGATGAGAAAACTTTGACTGGGGAATCTTTCCCAGTTGCCAAACAAAAAGATTCCCTTGTTTGGGCTGGTACCATCAACTTTAATGGTTATATTAGTGTTCAAACTACTGTTGTGGCTGAGGATTGTGTGGTGGCAAAAATGGCTGAGCTTGTAGAAGAAGCCCAAAATAACAAATCCAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACCCCAGCTGTTCTTGTCATATCAGCATGTCTTGCAGCTATTCCAGCTGCATTGAGAGTTCACAATCTTAGCCATTGGTTTCACTTAGCTCTGGTGGTTTTGGTGAGCGCATGTCCCTGTGCCCTAATCCTCTCCACCCCGGTCGCCGCCTTCTGCGCCCTTACGAAGGCCGCCATGGCCGGAGTTCTGATCAAAGGCGGCGACCACCTTGAACTTCTTGCAAAGATTAAGGTTATGGCCTTCGACAAGACTGGCACACTCACTAGAGGTGAATTTGTGGTAACAGATTTTCGAGCTCTTTGTGATGATATTAGCTTGCACACCTTGCTTCATTGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCGCTTGTCAACCATGGAAAGTTTCTTTCTGTTGATATTAAACCTGAAAACGTTGAGGAATTTGAGAATTTTCCTGGAGAAGGTGTTCGTGGGAAGATAGATGGGAACAATATTTACATTGGAAGTAGAAAAATTGCTGCAAGAGCTGGCTGCCCAACAGCTCCGAGCTCAGACGACGATGAAACAAAACAAGGGCAGACCGTTGGATATGTATTTTGCGGCACGACGTTAGCCGGATCGTTCGGTCTTTCGGACGCTGGTCGTTCAGGAGTTAAAGAGGCAATCCAGGAGATCAAGAGTTTTGGTATTAAAACAGCTATGCTCACTGGAGATTGTAATGCAGCAGCCATGCATGCACAACAACAGCTCGGGAATGCGCTCGACGTGATCCATTCGGAACTTCTACCGAAGGAAAAGGCAAATATCATAAAAAGATTCAAAGGGGATGGACCAACCGCCATGGTTGGAGATGGCTTAAATGATACCCCAGCATTAGCCACTGCTGATATTGGCATATCAATGGGCGTTTCAGGTTCAGCGCTGGCCACGGAAACTGGGAATGTGATCCTAATGTCAAATGACATGAGAAAAATCCCCAAAGCCATCAAATTAGCAAAGAAATCCCATGCAAAAGTAGTTCAAAATGTCGTTTTGTCGATCGGTACGAAGACCACAATCCTCGGCCTGGCATTCGCTGGACATCCGCTCGTCTGGGCGGCCGTTCTCGCCGATGTCGGTACCTGCCTATTGGTCATCTTGAACAGCATGCTCCTTTTGAGAGGAACTGATCACAGACATGGGGAGAAATGTTGCAAATCTTCCAAATTACCATGTTTTTCGACGAAACATGGAAAATGCAACGGCGGTAATGGTCGATCGTCTCACCGGCACGATCATCATATCATCACGATGATCATCAATGCCATGTTGTCGATGATCGATCGCCCAGTCGAGAGAATCGTGTTCATAAGCAATGTTGTTCTGAGAAAAATAATGTGCCACAGCAGAAAGAACATAAATTTCATCACAACCATTCAAATGAATGTGAGAAAAATCAAGTTGAGAAAGAGAGTAATGGAGATTCTTCAAGGAAAGTGGCTGAATCAAATTGTAATTGCCACTCACATCATGTTGCTATTGACATTCATGAAGATACTGACTGTGAGAGAGTAG 2514 44.75 MGEEAMEKEKVIMRENKLQRSHFDVLGLCCSSEVPLIENILKPLEGIKDISVIVPTRTLIVVHDSLLISQLQIVKALNEARLEANVQLNGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLQWLAVAAVAAGIFPILLKAISAVRHLRIDVNILAIIAVVGTIAMNDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMSLAPQTATIAETGEIVDSKEVKLNTVLAVKAGEVIPIDGIVVEGKCEVDEKTLTGESFPVAKQKDSLVWAGTINFNGYISVQTTVVAEDCVVAKMAELVEEAQNNKSKTQRFIDECAKYYTPAVLVISACLAAIPAALRVHNLSHWFHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGGDHLELLAKIKVMAFDKTGTLTRGEFVVTDFRALCDDISLHTLLHWVSSIESKSSHPMAAALVNHGKFLSVDIKPENVEEFENFPGEGVRGKIDGNNIYIGSRKIAARAGCPTAPSSDDDETKQGQTVGYVFCGTTLAGSFGLSDAGRSGVKEAIQEIKSFGIKTAMLTGDCNAAAMHAQQQLGNALDVIHSELLPKEKANIIKRFKGDGPTAMVGDGLNDTPALATADIGISMGVSGSALATETGNVILMSNDMRKIPKAIKLAKKSHAKVVQNVVLSIGTKTTILGLAFAGHPLVWAAVLADVGTCLLVILNSMLLLRGTDHRHGEKCCKSSKLPCFSTKHGKCNGGNGRSSHRHDHHIITMIINAMLSMIDRPVERIVFISNVVLRKIMCHSRKNINFITTIQMNVRKIKLRKRVMEILQGKWLNQIVIATHIMLLLTFMKILTVRE 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40109952 40119947 - Lag0006256.1 Lac6g2287 612056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2287 837 FunFam Copper-transporting ATPase 1, putative 190 304 - -
Lac6g2287 837 Gene3D - 412 534 IPR023299 GO:0000166(InterPro)
Lac6g2287 837 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 13 745 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Lac6g2287 837 Pfam haloacid dehalogenase-like hydrolase 397 616 - -
Lac6g2287 837 Pfam E1-E2 ATPase 203 379 - -
Lac6g2287 837 NCBIfam cadmium family heavy metal-translocating P-type ATPase 152 492 - -
Lac6g2287 837 SFLD C1.7: P-type atpase like 383 654 - -
Lac6g2287 837 PRINTS P-type cation-transporting ATPase superfamily signature 401 415 - -
Lac6g2287 837 PRINTS P-type cation-transporting ATPase superfamily signature 548 558 - -
Lac6g2287 837 PRINTS P-type cation-transporting ATPase superfamily signature 626 638 - -
Lac6g2287 837 PRINTS P-type cation-transporting ATPase superfamily signature 250 264 - -
Lac6g2287 837 PRINTS P-type cation-transporting ATPase superfamily signature 602 621 - -
Lac6g2287 837 SUPERFAMILY HMA, heavy metal-associated domain 14 85 IPR036163 GO:0046872(InterPro)
Lac6g2287 837 ProSitePatterns E1-E2 ATPases phosphorylation site. 403 409 IPR018303 -
Lac6g2287 837 SUPERFAMILY HAD-like 400 703 IPR036412 -
Lac6g2287 837 Gene3D - 15 88 - -
Lac6g2287 837 SUPERFAMILY Calcium ATPase, transduction domain A 215 300 IPR008250 -
Lac6g2287 837 Gene3D - 189 304 - -
Lac6g2287 837 CDD P-type_ATPase_HM 102 704 - -
Lac6g2287 837 ProSiteProfiles Heavy-metal-associated domain profile. 19 85 IPR006121 GO:0046872(InterPro)
Lac6g2287 837 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 395 IPR023298 -
Lac6g2287 837 NCBIfam HAD-IC family P-type ATPase 175 679 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac6g2287 837 SFLD p-type atpase 383 654 IPR044492 -
Lac6g2287 837 FunFam Putative cadmium/zinc-transporting ATPase 3 15 88 - -
Lac6g2287 837 Gene3D - 394 653 IPR023214 -
Lac6g2287 837 FunFam Putative cadmium/zinc-transporting ATPase 3 412 534 - -
Lac6g2287 837 NCBIfam heavy metal translocating P-type ATPase 152 705 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2287 Lac-Chr6:40109952 Lac5g2704 Lac-Chr5:45499992 1.40E-55 dispersed
Lac11g2103 Lac-Chr11:36935308 Lac6g2287 Lac-Chr6:40109952 1.30E-68 transposed
Lac1g1655 Lac-Chr1:37869389 Lac6g2287 Lac-Chr6:40109952 8.90E-62 transposed
Lac9g1155 Lac-Chr9:27066782 Lac6g2287 Lac-Chr6:40109952 5.50E-68 transposed
Lac3g0340 Lac-Chr3:2489555 Lac6g2287 Lac-Chr6:40109952 1.60E-294 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2287 K01534 - csv:101203668 1214.91