Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac6g2320 ATGGCTGCTGATTCTTCCTTTGATGGTGCTATTTTCGACTCGCCAAAATGTAGTAAGTTGAGTATGCAAGAGAAGAGAGAACTTGTTTATGAAATTTCAAAGTCACAAGTTGCATGTGAGACACTGCAGTCATGGAGCCGCCAAGACATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGAAAATATACTGGCTTGACGAAGCAGAAAATTATAGAGCATCTTTTGAGACTCATATCTGAAAAGAGATCATCAGTGTCTGAGGTTTCGAAAAACCCTGAGCCACAATCTCCTGCAGGTGGCCATAAGACTACAAAAAGGCAGAGGAAATCTGATCAGCCAGCTCAGCTTTCTGTTCCTACGAGTGACTTTCCGACCAGTAGTTCTCATAATGATTCTGGTCATATGGCATGCTGCAAAAACTTGGCTTGTCGAGCGACTTTGAATCCAGAAGATGCGTTTTGTAGAAGGTGTTCGTGCTGCATCTGTCGACAGTATGATGACAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCCGAGCCTCCATTTCAAGGTGATTCATGCAACATGTCATGTCATCTTGAATGTGCTTTAAAAGATGAAAGATCGGGAATTTCGAAAGCTGGACAAAGCAGGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGTTGCTGCAGAAAACAACTAGTCCATGCAAAAGATACAAGAAGGGTCGACATACTTTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAATGCTTTATCAGATTGTTGACGACGCAGTGAGGAAGCTTGAAGCTGAAGTGGGACCAATAGCTGGTGTACCAGTAAAGATGGGTAGAGGTATCGTAAACAGGCTTTCGTCGGGACCCGAAGTGCAAAAACTCTGTGCTTCTGCTATTGAATTACTGGATTCAATGCTCTCCAGCAAATCCTTGCATCTTTTGCCTAATCCTGACATACAAGATGCAAACTTTGTTCCTGAAAACATGGTTAGATTTGAAGATGTTCGGTCAACGTCCCTCACTCTAGTTTTGAGTTGTGAATGTGGGTCTTCTGAGAACCAGGTCGGCTTCACAATATGGCATCATAAGGCAGATGATGCAGATTATCCGACCGAGCCGACATGTATTCTACGACAACCGAAGGCGAGGTTTGTTGTGATGGGACTATCACCTGCTACTGAATATCATTTCAAAATTGTTCTGTTTGAAGAGACTAGAGAGTTGAGGAAGTTTGAAGTTCAGTTCTCAACAATTAGGGAGGTGGAAGAAAACCCAGGCTGCTTAGAAATTGAGAGAAGCCAAAGCCACGCAACCAACTGTAGTGATCTTTCTAATCCTTCCTCAGTTGAAGATGAAACTACCGACATTCTTCCATATGGCGATCGAACCGATAACCTAGGAAAAAACTCCACTGCCTATTTGAAGGGCACTGAAATGCTTTCCTCTGCTAATTTATCAACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGGACACCTGCAGGTACAGTTGCTTTGCTGGATGAGGCAAATGCTGCAGGAATGATTGGTTTGATTCCCAACTCTGTTGGATCAAAGCTCGAGAACAAGCACGGACCACCTGCCCCAAAACTCAACCCCGATAATCCATTAAGCGCCCTTGTTCGGTCTGGAATAGAGCGTGAGCCATTTGTTGGCTGTTCTGAAGATGGCTTGCCTATTACTCCCTGCAAGCTTGAGGTGCTAAAGGATAGTCTTGGAAGGGCCGAGAGACTGAAATCCAGCTGCAAGGACCCCGACAATAGGACTCGAAAAGGAGGGGAACCCCAAGATGGTGGCACGTCAAAGATGCGAACTGGGGAAAGGCAGGACGACAAGTCTGCTGAACACAGTGTCTCGGATCGGGATTTCGAGCACTATGTGAAGGTAATTAGATGGTTAGAGTGCGAGGGACATATCGAAAAGAACTTCAGGCAGAAGTTCCTCACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTAAAGATTGTGAAGGTGTTTGTTGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCCGAAAGCATTTCGAGCAAAAAACCGACGACTACGCCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2205 44.63 MAADSSFDGAIFDSPKCSKLSMQEKRELVYEISKSQVACETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLISEKRSSVSEVSKNPEPQSPAGGHKTTKRQRKSDQPAQLSVPTSDFPTSSSHNDSGHMACCKNLACRATLNPEDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGISKAGQSRGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKMLYQIVDDAVRKLEAEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMLSSKSLHLLPNPDIQDANFVPENMVRFEDVRSTSLTLVLSCECGSSENQVGFTIWHHKADDADYPTEPTCILRQPKARFVVMGLSPATEYHFKIVLFEETRELRKFEVQFSTIREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDRTDNLGKNSTAYLKGTEMLSSANLSTDAFNLSDNGEEGTPAGTVALLDEANAAGMIGLIPNSVGSKLENKHGPPAPKLNPDNPLSALVRSGIEREPFVGCSEDGLPITPCKLEVLKDSLGRAERLKSSCKDPDNRTRKGGEPQDGGTSKMRTGERQDDKSAEHSVSDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSESISSKKPTTTPPGFCMKLWH 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40636913 40640821 - Lag0006289.1 Lac6g2320 612089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac6g2320 734 MobiDBLite consensus disorder prediction 85 103 - -
Lac6g2320 734 MobiDBLite consensus disorder prediction 112 129 - -
Lac6g2320 734 MobiDBLite consensus disorder prediction 85 129 - -
Lac6g2320 734 PANTHER VIN3-LIKE PROTEIN 2-RELATED 13 734 IPR044514 GO:0010048(InterPro)|GO:0040029(InterPro)
Lac6g2320 734 MobiDBLite consensus disorder prediction 603 644 - -
Lac6g2320 734 Pfam PHD - plant homeodomain finger protein 140 260 IPR032881 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac6g2320 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0883 Lac-Chr3:7130618 Lac6g2320 Lac-Chr6:40636913 2.00E-97 dispersed
Lac6g2320 Lac-Chr6:40636913 Lac6g2982 Lac-Chr6:47404915 1.20E-92 dispersed
Lac6g0996 Lac-Chr6:9094793 Lac6g2320 Lac-Chr6:40636913 4.20E-118 transposed
Lac3g0327 Lac-Chr3:2353376 Lac6g2320 Lac-Chr6:40636913 5.00E-243 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g2320 . 4 471 PHD Gene Family AT4G30200 54.4 1.9e-134 477.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64